RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 TNPO2O14787 897 aaKnown RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 CNMDO75829 334 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 PARP1P09874 1014 aaKnown RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 TRIM21P19474 475 aaKnown RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 FCGRTP55899 365 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 ARMC3Q5W041 872 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 PCGF5Q86SE9 256 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 FAM160B2Q86V87 743 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 RAB11FIP4Q86YS3 637 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 MB21D1Q8N884 522 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 GABPB2Q8TAK5 448 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 CHURC1Q8WUH1 139 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 DHTKD1Q96HY7 919 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 SH3GL1Q99961 368 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 UPF3BQ9BZI7 483 aaKnown RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 CPVLQ9H3G5 476 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 TMEM165Q9HC07 324 aa12.85□□□□□ -0.35
BRCA1-222ENST00000493919 C6orf203Q9P0P8 240 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-222ENST00000493919 MTA2O94776 668 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SNHG28P0DPA3 235 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 RXRAP19793 462 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CTGFP29279 349 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SH3BGRP55822 239 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SLC8A3P57103 927 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SNAP25P60880 206 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CCNA1P78396 465 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 Q3C1V9 767 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 GPATCH4Q5T3I0 446 aaKnown RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ZNF654Q8IZM8 581 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CPXCR1Q8N123 301 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 USP33Q8TEY7 942 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 TRIM47Q96LD4 638 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 TSGA10Q9BZW7 698 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 PORCNQ9H237 461 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 TRMT1Q9NXH9 659 aaKnown RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ZMAT5Q9UDW3 170 aaKnown RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 AHCYL1O43865 530 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ZBED4O75132 1171 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ENPP1P22413 925 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 RPS6KB1P23443 525 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ADCY1Q08828 1119 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 TMEM132BQ14DG7 1078 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ARHGEF6Q15052 776 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 ASPRV1Q53RT3 343 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 COL13A1Q5TAT6 717 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SYDE2Q5VT97 1194 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CDCA2Q69YH5 1023 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 IQCEQ6IPM2 695 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CCDC174Q6PII3 467 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 CTU1Q7Z7A3 348 aaKnown RBP12.84□□□□□ -0.35
BRCA1-222ENST00000493919 MICU3Q86XE3 530 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 RETREG2Q8NC44 543 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 WDR19Q8NEZ3 1342 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SLC39A3Q9BRY0 314 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SPATC1LQ9H0A9 340 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 BATF3Q9NR55 127 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 PRR12Q9ULL5 1215 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 SLC12A7Q9Y666 1083 aa12.84□□□□□ -0.35
BRCA1-222ENST00000493919 BOLA2-SMG1P6H3BVE0 249 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 CEP104O60308 925 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 LIFRP42702 1097 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 RANBP1P43487 201 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 EXOSC10Q01780 885 aaKnown RBP12.83□□□□□ -0.36
BRCA1-222ENST00000493919 SNRNP48Q6IEG0 339 aaKnown RBP12.83□□□□□ -0.36
BRCA1-222ENST00000493919 Q6ZUG5 572 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 OTOP1Q7RTM1 612 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 CCDC144CPQ8IYA2 1237 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 SMYD1Q8NB12 490 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 SRRTQ9BXP5 876 aaKnown RBP12.83□□□□□ -0.36
BRCA1-222ENST00000493919 MOV10L1Q9BXT6 1211 aaKnown RBP12.83□□□□□ -0.36
BRCA1-222ENST00000493919 PHACTR1Q9C0D0 580 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 RAVER2Q9HCJ3 691 aaKnown RBP12.83□□□□□ -0.36
BRCA1-222ENST00000493919 CYP46A1Q9Y6A2 500 aa12.83□□□□□ -0.36
BRCA1-222ENST00000493919 DDAH1O94760 285 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 RPL13P26373 211 aaKnown RBP12.82□□□□□ -0.36
BRCA1-222ENST00000493919 HNRNPH1P31943 449 aaKnown RBP12.82□□□□□ -0.36
BRCA1-222ENST00000493919 USP11P51784 963 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 WASHC5Q12768 1159 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 TROAPQ12815 778 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 KMT5BQ4FZB7 885 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 RUFY3Q7L099 469 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 ARHGAP22Q7Z5H3 698 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 BRF1Q92994 677 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 COA7Q96BR5 231 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 KIF9Q9HAQ2 790 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 SLC38A10Q9HBR0 1119 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 TUBA8Q9NY65 449 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-222ENST00000493919 SEL1LQ9UBV2 794 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 ZNF214Q9UL59 606 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-222ENST00000493919 TMCC3Q9ULS5 477 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 PLXNB2O15031 1838 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 KLF18A0A0U1RQI7 1052 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 PLA2G6O60733 806 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 MAPK4P31152 587 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 STAT3P40763 770 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 CLK1P49759 484 aaKnown RBP12.82□□□□□ -0.36
BRCA1-222ENST00000493919 PRKCZQ05513 592 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 SNX1Q13596 522 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 GRM4Q14833 912 aa12.82□□□□□ -0.36
BRCA1-222ENST00000493919 GPR142Q7Z601 462 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms