RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CCDC196A0A1B0GTZ2 297 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 MYADML2A6NDP7 307 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 DHX16O60231 1041 aaKnown RBP13.99□□□□□ -0.17
UPF3A-210ENST00000493727 TIMP1P01033 207 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 C6orf222P0C671 652 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-210ENST00000493727 KCNA10Q16322 511 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 CCDC144BQ3MJ40 725 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 DCAF4Q8WV16 495 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 UPF3AQ9H1J1 476 aaKnown RBP13.99□□□□□ -0.17
UPF3A-210ENST00000493727 NCOA5Q9HCD5 579 aaKnown RBP13.99□□□□□ -0.17
UPF3A-210ENST00000493727 HOMER2Q9NSB8 354 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 RBM28Q9NW13 759 aaKnown RBP13.99□□□□□ -0.17
UPF3A-210ENST00000493727 MAP4K5Q9Y4K4 846 aa13.99□□□□□ -0.17
UPF3A-210ENST00000493727 FAM187AA6NFU0 413 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 ADCY6O43306 1168 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 DGAT1O75907 488 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 CDKL5O76039 1030 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 PARP1P09874 1014 aaKnown RBP13.98□□□□□ -0.17
UPF3A-210ENST00000493727 ABL2P42684 1182 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 GJA9P57773 515 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 SCRN1Q12765 414 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 TROAPQ12815 778 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 GRM4Q14833 912 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 TMEM240Q5SV17 173 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 MFSD5Q6N075 450 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 C16orf59Q7L2K0 433 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 FAM133AQ8N9E0 248 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 FANCBQ8NB91 859 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 FGD4Q96M96 766 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 TRERF1Q96PN7 1200 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 PBX4Q9BYU1 374 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 A1CFQ9NQ94 594 aaKnown RBP13.98□□□□□ -0.17
UPF3A-210ENST00000493727 PNMA2Q9UL42 364 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 TRANK1O15050 2925 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 LRRC37A2A6NM11 1700 aa13.98□□□□□ -0.17
UPF3A-210ENST00000493727 ZNF536O15090 1300 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 FRMPD2Q68DX3 1309 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-210ENST00000493727 A0A0U1RQG5 324 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-210ENST00000493727 PDHBP11177 359 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 ALAS1P13196 640 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 GNAQP50148 359 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 CDK7P50613 346 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 NKX3-2P78367 333 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 PPP2R5BQ15173 497 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 ASPRV1Q53RT3 343 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 GNASQ5JWF2 1037 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 CCDC174Q6PII3 467 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 KCTD1Q719H9 257 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 AGBL1Q96MI9 1066 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 MAP3K14Q99558 947 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 PRR12Q9ULL5 1215 aa13.97□□□□□ -0.17
UPF3A-210ENST00000493727 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-210ENST00000493727 NID2Q14112 1375 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 TLR3O15455 904 aaKnown RBP13.96□□□□□ -0.17
UPF3A-210ENST00000493727 CABYRO75952 493 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 ADH1CP00326 375 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 ASGR1P07306 291 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 GOLGA8HP0CJ92 632 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 GRM5P41594 1212 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 CNTN2Q02246 1040 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 TNFAIP2Q03169 654 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 CUL4AQ13619 759 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 BTNL9Q6UXG8 535 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 RASGRP2Q7LDG7 609 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 VTI1AQ96AJ9 217 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 IPO9Q96P70 1041 aaKnown RBP13.96□□□□□ -0.17
UPF3A-210ENST00000493727 SEZ6LQ9BYH1 1024 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 KATNBL1Q9H079 304 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 CCPG1Q9ULG6 757 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 SMC3Q9UQE7 1217 aa13.96□□□□□ -0.17
UPF3A-210ENST00000493727 LCTP09848 1927 aa13.96□□□□□ -0.18
UPF3A-210ENST00000493727 LOC102724159A0A0B4J2E5 919 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 GRXCR1A8MXD5 290 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ARVCFO00192 962 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ZEB2O60315 1214 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 PLEKHA8P1O95397 391 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ICAM1P05362 532 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 SNHG28P0DPA3 235 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 CSF2RAP15509 400 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 CDC27P30260 824 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ADD1P35611 737 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 AKAP17AQ02040 695 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ZNF543Q08ER8 600 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 PPIGQ13427 754 aaKnown RBP eCLIP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ARID5BQ14865 1188 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 PWP2Q15269 919 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 GPATCH4Q5T3I0 446 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 TMTC3Q6ZXV5 915 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 FAM126BQ8IXS8 530 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ATXN2LQ8WWM7 1075 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 LZTS2Q9BRK4 669 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 RANBP17Q9H2T7 1088 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 ADD3Q9UEY8 706 aaKnown RBP13.95□□□□□ -0.18
UPF3A-210ENST00000493727 MAD2L2Q9UI95 211 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 MYH6P13533 1939 aa13.95□□□□□ -0.18
UPF3A-210ENST00000493727 PRRC2BQ5JSZ5 2229 aaKnown RBP13.94□□□□□ -0.18
UPF3A-210ENST00000493727 PTPDC1A2A3K4 754 aa13.94□□□□□ -0.18
UPF3A-210ENST00000493727 KLRF2D3W0D1 207 aa13.94□□□□□ -0.18
UPF3A-210ENST00000493727 CTAGE5O15320 804 aa13.94□□□□□ -0.18
UPF3A-210ENST00000493727 AVPP01185 164 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms