RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TCEAL9Q9UHQ7 104 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 TBX21Q9UL17 535 aa18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ZNF215Q9UL58 517 aaPredicted RBP18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.46■□□□□ 0.55
MSH5-SAPCD1-206ENST00000491552 FAM205CA6NFA0 338 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 MSH4O15457 936 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 DHX15O43143 795 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SUPT20HL2P0C7V6 817 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GCFC2P16383 781 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GJB2P29033 226 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 MAGEA10P43363 369 aaPredicted RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 C7orf31Q8N865 590 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 NAP1L4Q99733 375 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 LBHD1Q9BQE6 289 aaPredicted RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 TRMT13Q9NUP7 481 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 HDAC6Q9UBN7 1215 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 DDX25Q9UHL0 483 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GTF2IRD1Q9UHL9 959 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SMC3Q9UQE7 1217 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 EMSYQ7Z589 1322 aa18.45■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 RAG1P15918 1043 aa18.44■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 CUL4AQ13619 759 aa18.44■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PPP4R3AQ6IN85 833 aa18.44■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 CHRDL2Q6WN34 429 aa18.44■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 DNAH12Q6ZR08 3092 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SLC37A4O43826 429 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 CCNT1O60563 726 aaKnown RBP18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 LGR5O75473 907 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ATG7O95352 703 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 CCNE2O96020 404 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 MDM2Q00987 491 aaPredicted RBP18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 KRT76Q01546 638 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GDF6Q6KF10 455 aaPredicted RBP18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ZNF746Q6NUN9 644 aaPredicted RBP18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GLG1Q92896 1179 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SLC5A5Q92911 643 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 RIT2Q99578 217 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GDF15Q99988 308 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 FOXP1Q9H334 677 aaPredicted RBP18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SMARCAD1Q9H4L7 1026 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 AZI2Q9H6S1 392 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 NOD1Q9Y239 953 aa18.43■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 K7ELQ4 463 aaPredicted RBP18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GAS7O60861 476 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 TIMP1P01033 207 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SMIM10L2AP0DMW4 78 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SMIM10L2BP0DMW5 78 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ITGB8P26012 769 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GNL2Q13823 731 aaKnown RBP18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PTGISQ16647 500 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 LRCH2Q5VUJ6 765 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ETNPPLQ8TBG4 499 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 BADQ92934 168 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PCYT2Q99447 389 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 TEKT3Q9BXF9 490 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 HIPK3Q9H422 1215 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ERAP1Q9NZ08 941 aa18.42■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 CYP2C9P11712 490 aa18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 MARK3P27448 753 aa18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 MIS18BP1Q6P0N0 1132 aa18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 ABHD15Q6UXT9 468 aa18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SMAP1Q8IYB5 467 aaPredicted RBP18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 NOC4LQ9BVI4 516 aaKnown RBP18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PPP1R12CQ9BZL4 782 aa18.41■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 IGKV6D-21A0A0A0MT36 114 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 C17orf102A2RUQ5 167 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 BACH1O14867 736 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PSMD10O75832 226 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 BMP8BP34820 402 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 STAT5BP51692 787 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 FAM160B1Q5W0V3 765 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PLPPR4Q7Z2D5 763 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 POTEDQ86YR6 584 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 GJA10Q969M2 543 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 SNX21Q969T3 373 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 PRO3102Q9H379 93 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 RNPEPQ9H4A4 650 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 KCNMB3Q9NPA1 279 aa18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 COLQQ9Y215 455 aaPredicted RBP18.4■□□□□ 0.54
MSH5-SAPCD1-206ENST00000491552 WDR64B1ANS9 1081 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 KIF28PB7ZC32 967 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TBX3O15119 743 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PSAPP07602 524 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 GNAT1P11488 350 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 HOXC8P31273 242 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CYP2C18P33260 490 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ZNF200P98182 395 aaPredicted RBP18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 HIC1Q14526 733 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MFSD5Q6N075 450 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 NOSTRINQ8IVI9 506 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CCDC60Q8IWA6 550 aaPredicted RBP18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CCDC155Q8N6L0 562 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 AFAP1L1Q8TED9 768 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 FAM20AQ96MK3 541 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CTAGE1Q96RT6 745 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 UBE2OQ9C0C9 1292 aaKnown RBP18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 UNC45AQ9H3U1 944 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ZNF302Q9NR11 478 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SAMM50Q9Y512 469 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PCDHA10Q9Y5I2 948 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms