RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RNF207Q6ZRF8 634 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 TRIM48Q8IWZ4 208 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 STPG3Q8N7X2 389 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 INPP5FQ9Y2H2 1132 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 LTFP02788 710 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 CHGBP05060 677 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 MIIPQ5JXC2 388 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 TAX1BP1Q86VP1 789 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 GIMAP8Q8ND71 665 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-206ENST00000491429 MICAL1Q8TDZ2 1067 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 ZNF503Q96F45 646 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 KCND1Q9NSA2 647 aa7.03□□□□□ -1.28
SCN1A-206ENST00000491429 DDAH1O94760 285 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 FAHP16930 419 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 TUSC3Q13454 348 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 NRN1LQ496H8 165 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 IFNL2Q8IZJ0 200 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 NEIL1Q96FI4 390 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-206ENST00000491429 ARHGAP20Q9P2F6 1191 aa7.02□□□□□ -1.29
SCN1A-206ENST00000491429 ZNF888P0CJ79 500 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-206ENST00000491429 ATF4P18848 351 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-206ENST00000491429 TGFB2P61812 414 aa7.01□□□□□ -1.29
SCN1A-206ENST00000491429 PAN2Q504Q3 1202 aaKnown RBP7.01□□□□□ -1.29
SCN1A-206ENST00000491429 USP39Q53GS9 565 aaKnown RBP7.01□□□□□ -1.29
SCN1A-206ENST00000491429 OTOP3Q7RTS5 596 aa7.01□□□□□ -1.29
SCN1A-206ENST00000491429 KATNBL1Q9H079 304 aa7.01□□□□□ -1.29
SCN1A-206ENST00000491429 TELO2Q9Y4R8 837 aa7.01□□□□□ -1.29
SCN1A-206ENST00000491429 IL18BPO95998 194 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 COL6A2P12110 1019 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 PFKPQ01813 784 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 AGBL4Q5VU57 503 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 CD276Q5ZPR3 534 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 FUKQ8N0W3 1084 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 EXTL1Q92935 676 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 TGIF2Q9GZN2 237 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 GPR27Q9NS67 375 aa7□□□□□ -1.29
SCN1A-206ENST00000491429 PLSCR1O15162 318 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 ZNF202O95125 648 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 PPP2R2AP63151 447 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 DGCR2P98153 550 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 MAP4K2Q12851 820 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 USP10Q14694 798 aaKnown RBP6.99□□□□□ -1.29
SCN1A-206ENST00000491429 REXO1L1PQ8IX06 675 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 UHMK1Q8TAS1 419 aaKnown RBP6.99□□□□□ -1.29
SCN1A-206ENST00000491429 KCTD13Q8WZ19 329 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 TACO1Q9BSH4 297 aaKnown RBP6.99□□□□□ -1.29
SCN1A-206ENST00000491429 IER2Q9BTL4 223 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 PHF20Q9BVI0 1012 aa6.99□□□□□ -1.29
SCN1A-206ENST00000491429 H0Y858 1186 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 ENO2P09104 434 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-206ENST00000491429 COMTP21964 271 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 ABHD18Q0P651 414 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 SLC10A6Q3KNW5 377 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 TNNI3KQ59H18 835 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 USP53Q70EK8 1073 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 EDAQ92838 391 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 CHFRQ96EP1 664 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 KCNJ15Q99712 375 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 CSRNP2Q9H175 543 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 C11orf21Q9P2W6 132 aa6.98□□□□□ -1.29
SCN1A-206ENST00000491429 ZNF839A8K0R7 811 aa6.97□□□□□ -1.29
SCN1A-206ENST00000491429 NKRFO15226 690 aaKnown RBP eCLIP6.97□□□□□ -1.29
SCN1A-206ENST00000491429 NARSO43776 548 aaKnown RBP6.97□□□□□ -1.29
SCN1A-206ENST00000491429 DLX3O60479 287 aa6.97□□□□□ -1.29
SCN1A-206ENST00000491429 MFAP1P55081 439 aaKnown RBP6.97□□□□□ -1.29
SCN1A-206ENST00000491429 Q6ZSN1 163 aa6.97□□□□□ -1.29
SCN1A-206ENST00000491429 CCSER2Q9H7U1 834 aa6.97□□□□□ -1.29
SCN1A-206ENST00000491429 A0A1W2PQU0 124 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 GJB6O95452 261 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 ACO1P21399 889 aaKnown RBP6.96□□□□□ -1.3
SCN1A-206ENST00000491429 GRK2P25098 689 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 GRK3P35626 688 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 ETFBP38117 255 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 RAC3P60763 192 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 PTH1RQ03431 593 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 FXNQ16595 210 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 RNF151Q2KHN1 245 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-206ENST00000491429 PDGFDQ9GZP0 370 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-206ENST00000491429 PRKAG3Q9UGI9 489 aa6.96□□□□□ -1.3
SCN1A-206ENST00000491429 ACOT7O00154 380 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 RAD17O75943 681 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 SSBP05455 408 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-206ENST00000491429 GNAT1P11488 350 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 TGM1P22735 817 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 NOLC1Q14978 699 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-206ENST00000491429 ZNF568Q3ZCX4 644 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 HABP4Q5JVS0 413 aaKnown RBP6.95□□□□□ -1.3
SCN1A-206ENST00000491429 KCNT2Q6UVM3 1135 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 EEPD1Q7L9B9 569 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 MRRFQ96E11 262 aaKnown RBP6.95□□□□□ -1.3
SCN1A-206ENST00000491429 DPYSL5Q9BPU6 564 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 CARD11Q9BXL7 1154 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 IKZF4Q9H2S9 585 aa6.95□□□□□ -1.3
SCN1A-206ENST00000491429 RRADP55042 308 aa6.94□□□□□ -1.3
SCN1A-206ENST00000491429 SPIRE1Q08AE8 756 aa6.94□□□□□ -1.3
SCN1A-206ENST00000491429 LSM12Q3MHD2 195 aaKnown RBP6.94□□□□□ -1.3
SCN1A-206ENST00000491429 RSPO2Q6UXX9 243 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-206ENST00000491429 LBX2Q6XYB7 198 aa6.94□□□□□ -1.3
SCN1A-206ENST00000491429 SLC39A2Q9NP94 309 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms