RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 PPP1R18Q6NYC8 613 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 RPAINQ86UA6 219 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 HERC6Q8IVU3 1022 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 ZNF713Q8N859 430 aaPredicted RBP11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 CRYGNQ8WXF5 182 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 SLC28A3Q9HAS3 691 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 BARHL2Q9NY43 387 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 CHD7Q9P2D1 2997 aa11.16□□□□□ -0.62
TMEM39A-210ENST00000490099 TANC1Q9C0D5 1861 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 CDH23Q9H251 3354 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 KLF18A0A0U1RQI7 1052 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 NOP56O00567 594 aaKnown RBP11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 SORBS3O60504 671 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 ADD1P35611 737 aaKnown RBP11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 UBE2SQ16763 222 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 FAM26DQ5JW98 314 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 CNKSR3Q6P9H4 555 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 HEATR3Q7Z4Q2 680 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 USP38Q8NB14 1042 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 SEPT1Q8WYJ6 367 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 FTOQ9C0B1 505 aaKnown RBP eCLIP11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 PRDM12Q9H4Q4 367 aa11.15□□□□□ -0.62
TMEM39A-210ENST00000490099 EMSYQ7Z589 1322 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 PRUNE2Q8WUY3 3088 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 CCDC196A0A1B0GTZ2 297 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 ESYT2A0FGR8 921 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 C17orf102A2RUQ5 167 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 MBLAC1A4D2B0 266 aaPredicted RBP11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 SPDYE3A6NKU9 549 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 ZBBXA8MT70 800 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 MEIS1O00470 390 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 TREHO43280 583 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 EFCAB14O75071 495 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 LGR5O75473 907 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 CPA1P15085 419 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 RPS6KB1P23443 525 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 WDR5P61964 334 aaKnown RBP11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 TAP1Q03518 808 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 MTMR1Q13613 665 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 NTRK3Q16288 839 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 PKN1Q16512 942 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 PFKFB3Q16875 520 aaPredicted RBP11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 PLEKHG4Q58EX7 1191 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 TRIM50Q86XT4 487 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 CYP2W1Q8TAV3 490 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 ATP6V0A1Q93050 837 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 MXRA8Q9BRK3 442 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 GLT8D2Q9H1C3 349 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 KCNH7Q9NS40 1196 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 SETD4Q9NVD3 440 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 TRPC6Q9Y210 931 aa11.14□□□□□ -0.63
TMEM39A-210ENST00000490099 NFASCO94856 1347 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 NRCAMQ92823 1304 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 SMCO2A6NFE2 343 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 GOLGA8AA7E2F4 631 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 GOLGA8BA8MQT2 603 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 RSPH10B2B2RC85 870 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 PRPF3O43395 683 aaKnown RBP11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 ARHGEF15O94989 841 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 REC8O95072 547 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 ATG7O95352 703 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 CA3P07451 260 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 CYP3A4P08684 503 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 RSPH10BP0C881 870 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 GNAT1P11488 350 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 TCF7P36402 384 aaPredicted RBP11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 SREBF1P36956 1147 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 NAPAP54920 295 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 AP3B2Q13367 1082 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 CEP55Q53EZ4 464 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 Q6ZUG5 572 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 NIPA1Q7RTP0 329 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 LMBR1Q8WVP7 490 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 JAKMIP1Q96N16 626 aaKnown RBP11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 PCYT2Q99447 389 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 COL25A1Q9BXS0 654 aaPredicted RBP11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 OSBPL7Q9BZF2 842 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 ZMYND12Q9H0C1 365 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 ZSWIM6Q9HCJ5 1215 aa11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 ZNF215Q9UL58 517 aaPredicted RBP11.13□□□□□ -0.63
TMEM39A-210ENST00000490099 GBF1Q92538 1859 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 IGKV6D-21A0A0A0MT36 114 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 GJB5O95377 273 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 ARP10275 920 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 SCG2P13521 617 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 PDIA3P30101 505 aaKnown RBP11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 THPOP40225 353 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 APOBRQ0VD83 1088 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 IKBKEQ14164 716 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 MARCH8Q5T0T0 291 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 PPP2R2DQ66LE6 453 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 BLOC1S2Q6QNY1 142 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 DBF4BQ8NFT6 615 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 BRF1Q92994 677 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 GAS2L1Q99501 681 aaPredicted RBP11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 TM6SF1Q9BZW5 370 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 SMARCAD1Q9H4L7 1026 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 EHMT1Q9H9B1 1298 aa11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 AGO4Q9HCK5 861 aaKnown RBP11.12□□□□□ -0.63
TMEM39A-210ENST00000490099 ERAP1Q9NZ08 941 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms