RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SNAI1O95863 264 aaPredicted RBP17.83■□□□□ 0.44
SYNE1-227ENST00000489156 CYP2C19P33261 490 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 IRF5Q13568 498 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 MORC3Q14149 939 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 CT47A1Q5JQC4 288 aaPredicted RBP17.83■□□□□ 0.44
SYNE1-227ENST00000489156 GRAMD1CQ8IYS0 662 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 MORC4Q8TE76 937 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 TRIB2Q92519 343 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 STK17AQ9UEE5 414 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 DACH1Q9UI36 760 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 MAN1B1Q9UKM7 699 aa17.83■□□□□ 0.44
SYNE1-227ENST00000489156 IGLV3-22A0A075B6J6 115 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 LOC102724159A0A0B4J2E5 919 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 BECN2A8MW95 431 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 GOLGA6L19H0YKK7 550 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 ELNP15502 786 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 PWP2Q15269 919 aaKnown RBP17.82■□□□□ 0.44
SYNE1-227ENST00000489156 OLFML2BQ68BL8 750 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 MTRQ99707 1265 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-227ENST00000489156 POTEMA6NI47 508 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 ADCY3O60266 1144 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 EIF3JO75822 258 aaKnown RBP17.82■□□□□ 0.44
SYNE1-227ENST00000489156 ITGB5P18084 799 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 PLCG1P19174 1290 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 PRMT2P55345 433 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 SETQ01105 290 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-227ENST00000489156 AMPD3Q01432 767 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 CEP55Q53EZ4 464 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 XRRA1Q6P2D8 792 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 MSL3Q8N5Y2 521 aaKnown RBP17.82■□□□□ 0.44
SYNE1-227ENST00000489156 MXRA8Q9BRK3 442 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 NT5C3AQ9H0P0 336 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 PTCH2Q9Y6C5 1203 aa17.82■□□□□ 0.44
SYNE1-227ENST00000489156 SYNGAP1Q96PV0 1343 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 A0A087WWV3 80 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 IKBKBO14920 756 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 RGS20O76081 388 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 IGHA2P01877 340 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 PRAMEF19Q5SWL8 479 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 HYIQ5T013 277 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 SEPT14Q6ZU15 432 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 DHX40Q8IX18 779 aaKnown RBP17.81■□□□□ 0.44
SYNE1-227ENST00000489156 FBXO16Q8IX29 292 aaPredicted RBP17.81■□□□□ 0.44
SYNE1-227ENST00000489156 CDK5RAP3Q96JB5 506 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 WDR11Q9BZH6 1224 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 UBIAD1Q9Y5Z9 338 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 DOCK5Q9H7D0 1870 aa17.81■□□□□ 0.44
SYNE1-227ENST00000489156 KDM3AQ9Y4C1 1321 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 SMTNL1A8MU46 457 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 MEIS1O00470 390 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 MSH4O15457 936 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 NIPA1Q7RTP0 329 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 SNX29Q8TEQ0 813 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 UIMC1Q96RL1 719 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 RMND1Q9NWS8 449 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 PTPN22Q9Y2R2 807 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 STAM2O75886 525 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 BMP6P22004 513 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 SPIRE1Q08AE8 756 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 TRIM32Q13049 653 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 GRB10Q13322 594 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 HAUS3Q68CZ6 603 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 ISM2Q6H9L7 571 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 PLA2G4DQ86XP0 818 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 KCTD17Q8N5Z5 321 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 INPP4AQ96PE3 977 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-227ENST00000489156 ABHD16BQ9H3Z7 469 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 JADE2Q9NQC1 790 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 PDGFCQ9NRA1 345 aa17.8■□□□□ 0.44
SYNE1-227ENST00000489156 ARP10275 920 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 MFSD14CQ5VZR4 134 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 CTU1Q7Z7A3 348 aaKnown RBP17.79■□□□□ 0.44
SYNE1-227ENST00000489156 TRMT44Q8IYL2 757 aaKnown RBP17.79■□□□□ 0.44
SYNE1-227ENST00000489156 ERMNQ8TAM6 284 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 PXYLP1Q8TE99 480 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 LRRC27Q9C0I9 530 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 KATNBL1Q9H079 304 aa17.79■□□□□ 0.44
SYNE1-227ENST00000489156 MTMR1Q13613 665 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 CUL4BQ13620 913 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 ACVR2BQ13705 512 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 TMEM119Q4V9L6 283 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 NLRX1Q86UT6 975 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 STAMQ92783 540 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 PNMA5Q96PV4 448 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 GTPBP4Q9BZE4 634 aaKnown RBP17.78■□□□□ 0.44
SYNE1-227ENST00000489156 KCNH7Q9NS40 1196 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 ZHX1Q9UKY1 873 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-227ENST00000489156 ERCC5P28715 1186 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-227ENST00000489156 GRK4P32298 578 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 TPM4P67936 248 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 KCNB1Q14721 858 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 GNPTABQ3T906 1256 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 TAPT1Q6NXT6 567 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 SARM1Q6SZW1 724 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 SV2BQ7L1I2 683 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 AOPEPQ8N6M6 819 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 SLC5A5Q92911 643 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 GJA10Q969M2 543 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 GPRASP2Q96D09 838 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms