RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 TRIML1Q8N9V2 468 aa12□□□□□ -0.49
USP11-209ENST00000488848 NUDT12Q9BQG2 462 aa12□□□□□ -0.49
USP11-209ENST00000488848 EIF2AK1Q9BQI3 630 aaKnown RBP12□□□□□ -0.49
USP11-209ENST00000488848 SDF4Q9BRK5 362 aa12□□□□□ -0.49
USP11-209ENST00000488848 GTPBP4Q9BZE4 634 aaKnown RBP12□□□□□ -0.49
USP11-209ENST00000488848 LRRC27Q9C0I9 530 aa12□□□□□ -0.49
USP11-209ENST00000488848 ABHD16BQ9H3Z7 469 aa12□□□□□ -0.49
USP11-209ENST00000488848 JPH1Q9HDC5 661 aaPredicted RBP12□□□□□ -0.49
USP11-209ENST00000488848 KCND2Q9NZV8 630 aa12□□□□□ -0.49
USP11-209ENST00000488848 DDX41Q9UJV9 622 aaKnown RBP12□□□□□ -0.49
USP11-209ENST00000488848 IGSF9BQ9UPX0 1349 aa12□□□□□ -0.49
USP11-209ENST00000488848 NKRFO15226 690 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP11-209ENST00000488848 GTPBP6O43824 516 aaPredicted RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 MARCH6O60337 910 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 MED24O75448 989 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 CAPN15O75808 1086 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 FARP2O94887 1054 aaPredicted RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 SLITRK3O94933 977 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 SNAI1O95863 264 aaPredicted RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 P4HBP07237 508 aaKnown RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 CTGFP29279 349 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 CDC25AP30304 524 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 STAT6P42226 847 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 SP2Q02086 613 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 DPYDQ12882 1025 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 ECM1Q16610 540 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 CT47A1Q5JQC4 288 aaPredicted RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 ABHD15Q6UXT9 468 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 C4orf19Q8IY42 314 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 CEP57L1Q8IYX8 460 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 AFAP1L1Q8TED9 768 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 LARP4BQ92615 738 aaKnown RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 RAD54LQ92698 747 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 GJA10Q969M2 543 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 PAGE5Q96GU1 130 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 GSDMAQ96QA5 445 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 C7orf25Q9BPX7 421 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 RNF186Q9NXI6 227 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.99□□□□□ -0.49
USP11-209ENST00000488848 SLC9A2Q9UBY0 812 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 SERTAD1Q9UHV2 236 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 PCDHA10Q9Y5I2 948 aa11.99□□□□□ -0.49
USP11-209ENST00000488848 DOCK5Q9H7D0 1870 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 EMSYQ7Z589 1322 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 FRMD3A2A2Y4 597 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 TNPO2O14787 897 aaKnown RBP11.98□□□□□ -0.49
USP11-209ENST00000488848 DKC1O60832 514 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP11-209ENST00000488848 HSPA6P17066 643 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 CCT6AP40227 531 aaKnown RBP11.98□□□□□ -0.49
USP11-209ENST00000488848 NKX3-2P78367 333 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 AMPD3Q01432 767 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 SP3Q02447 781 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 EHHADHQ08426 723 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 TTLL4Q14679 1199 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 KCNB1Q14721 858 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 COBLL1Q53SF7 1204 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 WDR78Q5VTH9 848 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 PAXIP1Q6ZW49 1069 aaPredicted RBP11.98□□□□□ -0.49
USP11-209ENST00000488848 DPP9Q86TI2 863 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 NPLOC4Q8TAT6 608 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 DHX58Q96C10 678 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 TRIM47Q96LD4 638 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 TRIM9Q9C026 710 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 ZSWIM4Q9H7M6 989 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 DBR1Q9UK59 544 aaKnown RBP11.98□□□□□ -0.49
USP11-209ENST00000488848 PPME1Q9Y570 386 aa11.98□□□□□ -0.49
USP11-209ENST00000488848 ZSWIM8A7E2V4 1837 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 ARID2Q68CP9 1835 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 PVALEFA0A1B0GWK0 134 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 POTEB3A0JP26 581 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 SYCE3A1L190 88 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 FSD2A1L4K1 749 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 LGR5O75473 907 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 ARIH2O95376 493 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 EYA4O95677 639 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 CCDC192P0DO97 292 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 QARSP47897 775 aaKnown RBP11.97□□□□□ -0.49
USP11-209ENST00000488848 SLC12A3P55017 1021 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 PRMT2P55345 433 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 ACTR2P61160 394 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 DUSP28Q4G0W2 176 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 CELF3Q5SZQ8 465 aaKnown RBP11.97□□□□□ -0.49
USP11-209ENST00000488848 NCAPH2Q6IBW4 605 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 POTEBQ6S5H4 581 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 MIER3Q7Z3K6 550 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 KCNK18Q7Z418 384 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 PDILTQ8N807 584 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 SYT2Q8N9I0 419 aaPredicted RBP11.97□□□□□ -0.49
USP11-209ENST00000488848 KCNN1Q92952 543 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 CDK5RAP3Q96JB5 506 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 NACC1Q96RE7 527 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 LXNQ9BS40 222 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 ANKEF1Q9NU02 776 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 TCEAL9Q9UHQ7 104 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 Q9Y3F1 56 aa11.97□□□□□ -0.49
USP11-209ENST00000488848 MAFBQ9Y5Q3 323 aaPredicted RBP11.97□□□□□ -0.49
USP11-209ENST00000488848 MYH9P35579 1960 aaKnown RBP11.97□□□□□ -0.49
USP11-209ENST00000488848 POTEFA5A3E0 1075 aa11.96□□□□□ -0.49
USP11-209ENST00000488848 KLRC4O43908 158 aa11.96□□□□□ -0.49
USP11-209ENST00000488848 SMC2O95347 1197 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms