RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 WNT8BQ93098 351 aa23.29■■□□□ 1.32
HDAC4-209ENST00000487617 SLKQ9H2G2 1235 aaPredicted RBP23.29■■□□□ 1.32
HDAC4-209ENST00000487617 AGO4Q9HCK5 861 aaKnown RBP23.29■■□□□ 1.32
HDAC4-209ENST00000487617 SETD4Q9NVD3 440 aa23.29■■□□□ 1.32
HDAC4-209ENST00000487617 SLC4A7Q9Y6M7 1214 aa23.29■■□□□ 1.32
HDAC4-209ENST00000487617 DEXIO95424 95 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 CYP3A4P08684 503 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 GNAT1P11488 350 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 HOXC8P31273 242 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 NIPA1Q7RTP0 329 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 SERINC5Q86VE9 423 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 PLA2G4DQ86XP0 818 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 GLG1Q92896 1179 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 GUCD1Q96NT3 240 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 TTYH1Q9H313 450 aaPredicted RBP23.28■■□□□ 1.32
HDAC4-209ENST00000487617 TPCN1Q9ULQ1 816 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 NFASCO94856 1347 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 DOCK5Q9H7D0 1870 aa23.28■■□□□ 1.32
HDAC4-209ENST00000487617 TMEM265A0A087WTH1 108 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 FAM86B1E9PN63 330 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 TREHO43280 583 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 PARNO95453 639 aaKnown RBP23.27■■□□□ 1.32
HDAC4-209ENST00000487617 SEC24BO95487 1268 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 FAM86B2P0C5J1 330 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 PBX2P40425 430 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 SCRN1Q12765 414 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 ITGB3BPQ13352 177 aaPredicted RBP23.27■■□□□ 1.32
HDAC4-209ENST00000487617 ANKRD1Q15327 319 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 ZNF618Q5T7W0 954 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 CRYGNQ8WXF5 182 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 TIFAQ96CG3 184 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 PBX4Q9BYU1 374 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 SMARCAD1Q9H4L7 1026 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 ERAP1Q9NZ08 941 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 STXBP5LQ9Y2K9 1186 aa23.27■■□□□ 1.32
HDAC4-209ENST00000487617 CDKL5O76039 1030 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 MARK3P27448 753 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 THPOP40225 353 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 AK2P54819 239 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 IL17RAQ96F46 866 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 MSRAQ9UJ68 235 aa23.26■■□□□ 1.31
HDAC4-209ENST00000487617 PFKFB2O60825 505 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 ACTR2P61160 394 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 GPNMBQ14956 572 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 RAB30Q15771 203 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 LMBR1Q8WVP7 490 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 AZI2Q9H6S1 392 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 NRCAMQ92823 1304 aa23.25■■□□□ 1.31
HDAC4-209ENST00000487617 IGLV3-22A0A075B6J6 115 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 DDX39AO00148 427 aaKnown RBP23.24■■□□□ 1.31
HDAC4-209ENST00000487617 NBNO60934 754 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 LGR5O75473 907 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 ATP2A2P16615 1042 aaKnown RBP23.24■■□□□ 1.31
HDAC4-209ENST00000487617 TRAF7Q6Q0C0 670 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 AIFM3Q96NN9 605 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 PCYT2Q99447 389 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 CDX2Q99626 313 aaPredicted RBP23.24■■□□□ 1.31
HDAC4-209ENST00000487617 PCDHA4Q9UN74 947 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 SCN5AQ14524 2016 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 EMSYQ7Z589 1322 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 TANC1Q9C0D5 1861 aa23.24■■□□□ 1.31
HDAC4-209ENST00000487617 RSPH10B2B2RC85 870 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 CXCL10P02778 98 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 RSPH10BP0C881 870 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 SETQ01105 290 aaPredicted RBP23.23■■□□□ 1.31
HDAC4-209ENST00000487617 PPFIA1Q13136 1202 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 UIMC1Q96RL1 719 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 ZNF577Q9BSK1 485 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 ZNF576Q9H609 170 aa23.23■■□□□ 1.31
HDAC4-209ENST00000487617 IPO5O00410 1097 aaKnown RBP23.22■■□□□ 1.31
HDAC4-209ENST00000487617 BAIAP3O94812 1187 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 CIITAP33076 1130 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 NEK4P51957 841 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 RABGGTBP53611 331 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 ADAM17P78536 824 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 PRR16Q569H4 304 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 CNKSR3Q6P9H4 555 aa23.22■■□□□ 1.31
HDAC4-209ENST00000487617 TRIP12Q14669 1992 aaPredicted RBP23.21■■□□□ 1.31
HDAC4-209ENST00000487617 CAND2O75155 1236 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 CCNE2O96020 404 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 MBTPS1Q14703 1052 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 GRIK4Q16099 956 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 BLIDQ8IZY5 108 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 FAM177A1Q8N128 213 aaPredicted RBP23.21■■□□□ 1.31
HDAC4-209ENST00000487617 SLC9A7Q96T83 725 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 C22orf23Q9BZE7 217 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 NKX2-4Q9H2Z4 354 aa23.21■■□□□ 1.31
HDAC4-209ENST00000487617 YBX2Q9Y2T7 364 aaKnown RBP23.21■■□□□ 1.31
HDAC4-209ENST00000487617 LAMA2P24043 3122 aaKnown RBP23.21■■□□□ 1.31
HDAC4-209ENST00000487617 STK36Q9NRP7 1315 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 DHX15O43143 795 aaKnown RBP23.2■■□□□ 1.3
HDAC4-209ENST00000487617 ATG7O95352 703 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 CTSHP09668 335 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 KCNJ6P48051 423 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 STAT5BP51692 787 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 USP11P51784 963 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 GRIN2CQ14957 1233 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 GALNT17Q6IS24 598 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 PLPPR4Q7Z2D5 763 aa23.2■■□□□ 1.3
HDAC4-209ENST00000487617 DAGLBQ8NCG7 672 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms