RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IPO5O00410 1097 aaKnown RBP16.75■□□□□ 0.27
USP4-212ENST00000486549 EDIL3O43854 480 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 TDP2O95551 362 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 MMP1P03956 469 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 CYP2C9P11712 490 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 MCM2P49736 904 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 USP11P51784 963 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 PTPN11Q06124 597 aaPredicted RBP16.75■□□□□ 0.27
USP4-212ENST00000486549 SEPT1Q8WYJ6 367 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 C8orf76Q96K31 380 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 TUT1Q9H6E5 874 aaKnown RBP16.75■□□□□ 0.27
USP4-212ENST00000486549 HDAC6Q9UBN7 1215 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 FAM205CA6NFA0 338 aa16.74■□□□□ 0.27
USP4-212ENST00000486549 ACTR2P61160 394 aa16.74■□□□□ 0.27
USP4-212ENST00000486549 LETM2Q2VYF4 491 aa16.74■□□□□ 0.27
USP4-212ENST00000486549 GDF6Q6KF10 455 aaPredicted RBP16.74■□□□□ 0.27
USP4-212ENST00000486549 DIS3L2Q8IYB7 885 aaKnown RBP16.74■□□□□ 0.27
USP4-212ENST00000486549 LENG9Q96B70 501 aa16.74■□□□□ 0.27
USP4-212ENST00000486549 HIPK3Q9H422 1215 aa16.74■□□□□ 0.27
USP4-212ENST00000486549 ZNF215Q9UL58 517 aaPredicted RBP16.74■□□□□ 0.27
USP4-212ENST00000486549 TRIP12Q14669 1992 aaPredicted RBP16.74■□□□□ 0.27
USP4-212ENST00000486549 UMODL1Q5DID0 1318 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 BTBD18B2RXH4 712 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 MSH4O15457 936 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 TIMP1P01033 207 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 SUPT20HL2P0C7V6 817 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 MARK3P27448 753 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 SAFBQ15424 915 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP4-212ENST00000486549 PTGISQ16647 500 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 EARS2Q5JPH6 523 aaKnown RBP16.73■□□□□ 0.27
USP4-212ENST00000486549 NEK8Q86SG6 692 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 SESTD1Q86VW0 696 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 GLG1Q92896 1179 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 GTF2IRD1Q9UHL9 959 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 TCEAL9Q9UHQ7 104 aa16.73■□□□□ 0.27
USP4-212ENST00000486549 DHX15O43143 795 aaKnown RBP16.72■□□□□ 0.27
USP4-212ENST00000486549 CCNE2O96020 404 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 SMIM10L2AP0DMW4 78 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 SMIM10L2BP0DMW5 78 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 CYP2C18P33260 490 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 TNFRSF25Q93038 417 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 GJA10Q969M2 543 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 LRCH3Q96II8 777 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 NOC4LQ9BVI4 516 aaKnown RBP16.72■□□□□ 0.27
USP4-212ENST00000486549 AZI2Q9H6S1 392 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 TBC1D22BQ9NU19 505 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 DDX25Q9UHL0 483 aaKnown RBP16.72■□□□□ 0.27
USP4-212ENST00000486549 KAT6AQ92794 2004 aa16.72■□□□□ 0.27
USP4-212ENST00000486549 CYP3A7-CYP3A51PA0A087WV96 503 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 C17orf102A2RUQ5 167 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 SOX1O00570 391 aaPredicted RBP16.71■□□□□ 0.27
USP4-212ENST00000486549 BACH1O14867 736 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 CCNT1O60563 726 aaKnown RBP16.71■□□□□ 0.27
USP4-212ENST00000486549 CYP3A7P24462 503 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 CCL23P55773 120 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 ZNF200P98182 395 aaPredicted RBP16.71■□□□□ 0.27
USP4-212ENST00000486549 FPGSQ05932 587 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 Q4G0T1 1027 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 MOXD1Q6UVY6 613 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 PCYT2Q99447 389 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 SMARCAD1Q9H4L7 1026 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 TANC1Q9C0D5 1861 aa16.71■□□□□ 0.27
USP4-212ENST00000486549 EMSYQ7Z589 1322 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 CHMP2AO43633 222 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 SLC37A4O43826 429 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 GAS7O60861 476 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 LGR5O75473 907 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 GJB2P29033 226 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 GNL2Q13823 731 aaKnown RBP16.7■□□□□ 0.26
USP4-212ENST00000486549 HIC1Q14526 733 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 LRCH2Q5VUJ6 765 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 FAM109BQ6ICB4 259 aaPredicted RBP16.7■□□□□ 0.26
USP4-212ENST00000486549 MFSD5Q6N075 450 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 MIS18BP1Q6P0N0 1132 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 FBXO18Q8NFZ0 1043 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 SLC5A5Q92911 643 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 MBOAT7Q96N66 472 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 TEKT3Q9BXF9 490 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 RNPEPQ9H4A4 650 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 SETD4Q9NVD3 440 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 ERAP1Q9NZ08 941 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 KIF3AQ9Y496 699 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 SAMM50Q9Y512 469 aa16.7■□□□□ 0.26
USP4-212ENST00000486549 MYH9P35579 1960 aaKnown RBP16.69■□□□□ 0.26
USP4-212ENST00000486549 SCN5AQ14524 2016 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 WDR81Q562E7 1941 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 CSF2RAP15509 400 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 KRT76Q01546 638 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 ZNF746Q6NUN9 644 aaPredicted RBP16.69■□□□□ 0.26
USP4-212ENST00000486549 ABHD15Q6UXT9 468 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 TMEM199Q8N511 208 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 DEFB123Q8N688 67 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 ATP6V0A1Q93050 837 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 SCLYQ96I15 445 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 WNT8AQ9H1J5 351 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 SMC3Q9UQE7 1217 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 TRPC6Q9Y210 931 aa16.69■□□□□ 0.26
USP4-212ENST00000486549 MARCH6O60337 910 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 ATG7O95352 703 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 GCFC2P16383 781 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms