RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GYG1P46976 350 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 NT5C2P49902 561 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 ERVK-9P63128 1117 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 TRADDQ15628 312 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 KIAA0753Q2KHM9 967 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 LETM2Q2VYF4 491 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 CEP57Q86XR8 500 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 OSBPL7Q9BZF2 842 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 NFS1Q9Y697 457 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 TAF1LQ8IZX4 1826 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 CLGNO14967 610 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 TECP42680 631 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 RNASE9P60153 205 aaKnown RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 NONOQ15233 471 aaKnown RBP eCLIP14.57□□□□□ -0.08
USP40-214ENST00000483519 RPS6KA1Q15418 735 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 LACTB2Q53H82 288 aaPredicted RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 CAVIN4Q5BKX8 364 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 FAM83BQ5T0W9 1011 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 GKAP1Q5VSY0 366 aaPredicted RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 LINC00116Q8NCU8 138 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 BANK1Q8NDB2 785 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 PBKQ96KB5 322 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 CALR3Q96L12 384 aaKnown RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 CCDC87Q9NVE4 849 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 PACSIN2Q9UNF0 486 aaPredicted RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 ECHS1P30084 290 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 MRPL12P52815 198 aaKnown RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 KCNQ4P56696 695 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 KCNMA1Q12791 1236 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 ORC2Q13416 577 aaPredicted RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 SBK1Q52WX2 424 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 FLAD1Q8NFF5 587 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.57□□□□□ -0.08
USP40-214ENST00000483519 SWAP70Q9UH65 585 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 KCNK3O14649 394 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 UAP1Q16222 522 aaPredicted RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 IFI16Q16666 785 aaKnown RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 PARP10Q53GL7 1025 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 NEK8Q86SG6 692 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 TBC1D5Q92609 795 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 CDK5RAP3Q96JB5 506 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 MMTAG2Q9BU76 263 aaKnown RBP14.57□□□□□ -0.08
USP40-214ENST00000483519 LRRC27Q9C0I9 530 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 HAUS2Q9NVX0 235 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 MAD2L2Q9UI95 211 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 LEMD3Q9Y2U8 911 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 COL4A3BPQ9Y5P4 624 aa14.57□□□□□ -0.08
USP40-214ENST00000483519 MYMKA6NI61 221 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 BTNL10A8MVZ5 291 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 DNM1LO00429 736 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 TLR2O60603 784 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 GCFC2P16383 781 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 CRKLP46109 303 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 SCTRP47872 440 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 EVX2Q03828 476 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 PSMD2Q13200 908 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 XRCC4Q13426 336 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 OR2W6PQ8NHA6 318 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 ACTRT1Q8TDG2 376 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 UBLCP1Q8WVY7 318 aaPredicted RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 LARP4BQ92615 738 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 ANKS1AQ92625 1134 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 AKT1S1Q96B36 256 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 SCLT1Q96NL6 688 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 LSM14BQ9BX40 385 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 GHRP10912 638 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 POLR2FP61218 127 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 SLC15A2Q16348 729 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 QPCTQ16769 361 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 NBPF9Q3BBW0 867 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 C10orf76Q5T2E6 689 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 SCFD2Q8WU76 684 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 TATDN2Q93075 761 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 MIEF2Q96C03 454 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 ZMYND12Q9H0C1 365 aa14.56□□□□□ -0.08
USP40-214ENST00000483519 CNOT10Q9H9A5 744 aaKnown RBP14.56□□□□□ -0.08
USP40-214ENST00000483519 KIAA1551Q9HCM1 1747 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 RPS6KA4O75676 772 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 PDHBP11177 359 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 TMOD1P28289 359 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 FKBP3Q00688 224 aaKnown RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 TFAP4Q01664 338 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 KLHL30Q0D2K2 578 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 RAPGEF1Q13905 1077 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 UBE4AQ14139 1066 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 CPLX4Q7Z7G2 160 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 ZNF384Q8TF68 577 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 RAPGEF5Q92565 580 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 LZTS2Q9BRK4 669 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 KDM4CQ9H3R0 1056 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 TFCP2L1Q9NZI6 479 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 TPX2Q9ULW0 747 aaKnown RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 A0A087X0T9 212 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 CCDC188H7C350 402 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 PGRMC1O00264 195 aaKnown RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 DNAJC8O75937 253 aaPredicted RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 NOL4O94818 638 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 KIF4AO95239 1232 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 SSBP05455 408 aaKnown RBP eCLIP14.55□□□□□ -0.08
USP40-214ENST00000483519 FAM228BP0C875 321 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms