RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FAHP16930 419 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 HSD3B2P26439 372 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 TMEM177Q53S58 311 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 TCERG1LQ5VWI1 586 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 EP400NLQ6ZTU2 488 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 CISD2Q8N5K1 135 aaKnown RBP8.69□□□□□ -1.02
USP40-213ENST00000483216 C11orf84Q9BUA3 381 aaPredicted RBP8.69□□□□□ -1.02
USP40-213ENST00000483216 ATP23Q9Y6H3 246 aa8.69□□□□□ -1.02
USP40-213ENST00000483216 CLASP2O75122 1294 aaKnown RBP8.68□□□□□ -1.02
USP40-213ENST00000483216 GJA4P35212 333 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 FLT3P36888 993 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 ZNF460Q14592 562 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 C21orf62-AS1Q17RA5 79 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 KRTAP19-4Q3LI73 84 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 DALRD3Q5D0E6 543 aaKnown RBP8.68□□□□□ -1.02
USP40-213ENST00000483216 BTBD8Q5XKL5 378 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 SAPCD2Q86UD0 394 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 NIM1KQ8IY84 436 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 KYQ8NBH2 561 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 SAMD15Q9P1V8 674 aa8.68□□□□□ -1.02
USP40-213ENST00000483216 ACOT7O00154 380 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 PTPN1P18031 435 aaKnown RBP8.67□□□□□ -1.02
USP40-213ENST00000483216 MECP2P51608 486 aaKnown RBP8.67□□□□□ -1.02
USP40-213ENST00000483216 ITGA1P56199 1179 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 JAG1P78504 1218 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 VWA3BQ502W6 1294 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 UBE2R2Q712K3 238 aaPredicted RBP8.67□□□□□ -1.02
USP40-213ENST00000483216 SIAH1Q8IUQ4 282 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 TTLL6Q8N841 843 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 ZBTB8AQ96BR9 441 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 SYT3Q9BQG1 590 aa8.67□□□□□ -1.02
USP40-213ENST00000483216 FAM90A27PA6NNH2 459 aa8.66□□□□□ -1.02
USP40-213ENST00000483216 GLRX3O76003 335 aaKnown RBP8.66□□□□□ -1.02
USP40-213ENST00000483216 DLX2Q07687 328 aaPredicted RBP8.66□□□□□ -1.02
USP40-213ENST00000483216 OTOP1Q7RTM1 612 aa8.66□□□□□ -1.02
USP40-213ENST00000483216 PROSER1Q86XN7 944 aa8.66□□□□□ -1.02
USP40-213ENST00000483216 C2orf69Q8N8R5 385 aa8.66□□□□□ -1.02
USP40-213ENST00000483216 TMEM209Q96SK2 561 aa8.66□□□□□ -1.02
USP40-213ENST00000483216 SLC12A8A0AV02 714 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 SH3D21A4FU49 640 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 M0R2C6 588 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 FFAR3O14843 346 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 JMJD7P0C870 316 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 POU3F2P20265 443 aaPredicted RBP8.65□□□□□ -1.02
USP40-213ENST00000483216 ADAM9Q13443 819 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 ARHGAP44Q17R89 818 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 CDCA2Q69YH5 1023 aaPredicted RBP8.65□□□□□ -1.02
USP40-213ENST00000483216 LRRTM3Q86VH5 581 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 NOSTRINQ8IVI9 506 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 LINC01356Q8N9X3 169 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 MFSD3Q96ES6 412 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 RIC8BQ9NVN3 520 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 WASF3Q9UPY6 502 aa8.65□□□□□ -1.02
USP40-213ENST00000483216 KCNK3O14649 394 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 SMARCA5O60264 1052 aaPredicted RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 ENO2P09104 434 aaPredicted RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 SMAD4Q13485 552 aaKnown RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 CFAP100Q494V2 611 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 TM4SF20Q53R12 229 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 TAF7LQ5H9L4 462 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 PIK3R6Q5UE93 754 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 CD276Q5ZPR3 534 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 VASNQ6EMK4 673 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 DHX37Q8IY37 1157 aaKnown RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 DDX1Q92499 740 aaKnown RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 WNK4Q96J92 1243 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 ORAI3Q9BRQ5 295 aa8.64□□□□□ -1.03
USP40-213ENST00000483216 SPATA6Q9NWH7 488 aaPredicted RBP8.64□□□□□ -1.03
USP40-213ENST00000483216 FAM83GA6ND36 823 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 TRAF5O00463 557 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 C4BPAP04003 597 aaKnown RBP8.63□□□□□ -1.03
USP40-213ENST00000483216 ZSCAN22P10073 491 aaPredicted RBP8.63□□□□□ -1.03
USP40-213ENST00000483216 THBS2P35442 1172 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 GYS2P54840 703 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 STK32CQ86UX6 486 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 CHST14Q8NCH0 376 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 ZNF526Q8TF50 670 aaPredicted RBP8.63□□□□□ -1.03
USP40-213ENST00000483216 BOCQ9BWV1 1114 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 CABP5Q9NP86 173 aa8.63□□□□□ -1.03
USP40-213ENST00000483216 CBX4O00257 560 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 ZBTB48P10074 688 aaPredicted RBP8.62□□□□□ -1.03
USP40-213ENST00000483216 DBPQ10586 325 aaPredicted RBP8.62□□□□□ -1.03
USP40-213ENST00000483216 TMC5Q6UXY8 1006 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 LIPIQ6XZB0 460 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 LCNL1Q6ZST4 164 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 TTLL7Q6ZT98 887 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 TP53I13Q8NBR0 393 aaPredicted RBP8.62□□□□□ -1.03
USP40-213ENST00000483216 DLG3Q92796 817 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 CLIC6Q96NY7 704 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 WRNIP1Q96S55 665 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 DLL4Q9NR61 685 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 RBPJLQ9UBG7 517 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 B3GALT1Q9Y5Z6 326 aa8.62□□□□□ -1.03
USP40-213ENST00000483216 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.61□□□□□ -1.03
USP40-213ENST00000483216 SCDO00767 359 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 RPL13P26373 211 aaKnown RBP8.61□□□□□ -1.03
USP40-213ENST00000483216 HERVK_113P62684 666 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 SEC23AQ15436 765 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 PRR31Q5SQ13 230 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 CPZQ66K79 652 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms