RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ACTR2P61160 394 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 MTFR1Q15390 333 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 TPRNQ4KMQ1 711 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 SPECC1Q5M775 1068 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 AXDND1Q5T1B0 1012 aaPredicted RBP13.77□□□□□ -0.21
SDC1-206ENST00000482879 B3GNT9Q6UX72 402 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 IGSF22Q8N9C0 903 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 AFG1LQ8WV93 481 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 SEPT1Q8WYJ6 367 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 EMID1Q96A84 441 aaPredicted RBP13.77□□□□□ -0.21
SDC1-206ENST00000482879 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.77□□□□□ -0.21
SDC1-206ENST00000482879 DISC1Q9NRI5 854 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 TELO2Q9Y4R8 837 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 KAT6AQ92794 2004 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 GSTTP1A0A1W2PQM5 241 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 POTEFA5A3E0 1075 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 GOLGA6L4A6NEF3 574 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 PP2D1A8MPX8 630 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 MSCO60682 206 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 CDC25AP30304 524 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 EPHA7Q15375 998 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 HSDL1Q3SXM5 330 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 ADALQ6DHV7 355 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 MIS18BP1Q6P0N0 1132 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 SMAP1Q8IYB5 467 aaPredicted RBP13.76□□□□□ -0.21
SDC1-206ENST00000482879 ZNF579Q8NAF0 562 aaKnown RBP13.76□□□□□ -0.21
SDC1-206ENST00000482879 RDM1Q8NG50 284 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 PPTC7Q8NI37 304 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 ERMNQ8TAM6 284 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 ARMC5Q96C12 935 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 AK8Q96MA6 479 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 GPR20Q99678 358 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 MCOLN1Q9GZU1 580 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 RNF208Q9H0X6 261 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 SPC25Q9HBM1 224 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 XPNPEP3Q9NQH7 507 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 PCDHA10Q9Y5I2 948 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 KIAA0100Q14667 2235 aaKnown RBP13.76□□□□□ -0.21
SDC1-206ENST00000482879 FRMPD3Q5JV73 1810 aa13.76□□□□□ -0.21
SDC1-206ENST00000482879 GOLGA6L22H0YM25 854 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 PRPF40AO75400 957 aaKnown RBP13.75□□□□□ -0.21
SDC1-206ENST00000482879 ATG7O95352 703 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 PGK1P00558 417 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 PSAPP07602 524 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 C6orf222P0C671 652 aaPredicted RBP13.75□□□□□ -0.21
SDC1-206ENST00000482879 SUPT20HL2P0C7V6 817 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 UBA7P41226 1012 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 GJA9P57773 515 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 BRDTQ58F21 947 aaPredicted RBP13.75□□□□□ -0.21
SDC1-206ENST00000482879 KRT79Q5XKE5 535 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 ABHD15Q6UXT9 468 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 TMEM87AQ8NBN3 555 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 EPSTI1Q96J88 318 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 ZNF333Q96JL9 665 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 EIF2AK1Q9BQI3 630 aaKnown RBP13.75□□□□□ -0.21
SDC1-206ENST00000482879 UPF3AQ9H1J1 476 aaKnown RBP13.75□□□□□ -0.21
SDC1-206ENST00000482879 STK24Q9Y6E0 443 aa13.75□□□□□ -0.21
SDC1-206ENST00000482879 SYNRGQ9UMZ2 1314 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 A6NJR5 290 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 BACH1O14867 736 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 PPFIA4O75335 1185 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 MYCNP04198 464 aaPredicted RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 MMP3P08254 477 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 TCF7P36402 384 aaPredicted RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 CCT6AP40227 531 aaKnown RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 CPT1AP50416 773 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 IRX5P78411 483 aaPredicted RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 BEX3Q00994 111 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 FSCN1Q16658 493 aaKnown RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 DGKDQ16760 1214 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 UTP14CQ5TAP6 766 aaKnown RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 LHX8Q68G74 356 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 SWSAP1Q6NVH7 229 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 SHC4Q6S5L8 630 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 USP49Q70CQ1 688 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 CABP7Q86V35 215 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 SNX29Q8TEQ0 813 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 SYMPKQ92797 1274 aaKnown RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 DYDC2Q96IM9 177 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 PAK6Q9NQU5 681 aaPredicted RBP13.74□□□□□ -0.21
SDC1-206ENST00000482879 RGL1Q9NZL6 768 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 GABBR1Q9UBS5 961 aa13.74□□□□□ -0.21
SDC1-206ENST00000482879 A0A1W2PQ27 194 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 A0A1W2PQ64 194 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 A0A1W2PQD8 194 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 MYADML2A6NDP7 307 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 CTAGE5O15320 804 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 ZEB2O60315 1214 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 ADAMTS4O75173 837 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 GADD45BO75293 160 aaPredicted RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 MED24O75448 989 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 P4HBP07237 508 aaKnown RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 CMA1P23946 247 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 TXLNAP40222 546 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 CYP4A11Q02928 519 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 CTTNQ14247 550 aaKnown RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 ZRSR1Q15695 479 aaKnown RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 GNASQ5JWF2 1037 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 FAM160B1Q5W0V3 765 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 RESP18Q5W5W9 173 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms