RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 FUT2Q10981 343 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 MKRN4PQ13434 485 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 MBTPS1Q14703 1052 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 PLEKHG4Q58EX7 1191 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 WWC2Q6AWC2 1192 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 MCTP2Q6DN12 878 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 RASEFQ8IZ41 740 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 CCDC82Q8N4S0 544 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 ZBED2Q9BTP6 218 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 BCAS3Q9H6U6 928 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 BARHL2Q9NY43 387 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 RALGAPA2Q2PPJ7 1873 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 NFASCO94856 1347 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 KLF18A0A0U1RQI7 1052 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 GOLGA8AA7E2F4 631 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 GOLGA8BA8MQT2 603 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 REC8O95072 547 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 AMHP03971 560 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 HSPA4P34932 840 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 ADCY7P51828 1080 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 DEFB103AP81534 67 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 UBE2SQ16763 222 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 ADCK5Q3MIX3 580 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 FAM26DQ5JW98 314 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 TRIM50Q86XT4 487 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 CCDC12Q8WUD4 166 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 LMBR1Q8WVP7 490 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 SEPT8Q92599 483 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 SMARCAD1Q9H4L7 1026 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 JPH1Q9HDC5 661 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 BRPF3Q9ULD4 1205 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 INSL6Q9Y581 213 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 XIRP2A4UGR9 3374 aa13.88□□□□□ -0.19
SQSTM1-207ENST00000481335 NLRC5Q86WI3 1866 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 hCG_1642624A0A1W2PR95 340 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 ESYT2A0FGR8 921 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 MBLAC1A4D2B0 266 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 STXBP3O00186 592 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 ATP9AO75110 1047 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 SREBF1P36956 1147 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 CLK2P49760 499 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 METAP2P50579 478 aaKnown RBP eCLIP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 MRPS5P82675 430 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 ARHGAP4P98171 946 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 FGD1P98174 961 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 AAK1Q2M2I8 961 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 UTP14CQ5TAP6 766 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 FAM43BQ6ZT52 329 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 NIPA1Q7RTP0 329 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 RSPH3Q86UC2 560 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 RAB11FIP4Q86YS3 637 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 DBF4BQ8NFT6 615 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 CCDC136Q96JN2 1154 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 ASB2Q96Q27 587 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 MXRA8Q9BRK3 442 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 ANO3Q9BYT9 981 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 KCNH7Q9NS40 1196 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 SETD4Q9NVD3 440 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 MTCH2Q9Y6C9 303 aa13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 MYH9P35579 1960 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-207ENST00000481335 GSTTP1A0A1W2PQM5 241 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 RRN3P2A6NIE6 340 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 PSMA5P28066 241 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SLC26A2P50443 739 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 ERVK-21P61565 698 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 HTRA4P83105 476 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SP4Q02446 784 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 PPFIA1Q13136 1202 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 PFKFB3Q16875 520 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 CEP55Q53EZ4 464 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 TYW1BQ6NUM6 668 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 BLOC1S2Q6QNY1 142 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 PPM1EQ8WY54 764 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 ARNTL2Q8WYA1 636 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 TCEANC2Q96MN5 208 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SAMD11Q96NU1 681 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 TGS1Q96RS0 853 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SDF4Q9BRK5 362 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 AGXT2Q9BYV1 514 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 AZI2Q9H6S1 392 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SLC9A2Q9UBY0 812 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 COG5Q9UP83 839 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 V9GY48 417 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 BRWD1Q9NSI6 2320 aa13.86□□□□□ -0.19
SQSTM1-207ENST00000481335 SMCO2A6NFE2 343 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 CDC27P30260 824 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 GRIK4Q16099 956 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 TCTN1Q2MV58 587 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 PLPPR4Q7Z2D5 763 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 IL27Q8NEV9 243 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 SP7Q8TDD2 431 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 GLG1Q92896 1179 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 IFIH1Q9BYX4 1025 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 ZMYND12Q9H0C1 365 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 FAM217BQ9NTX9 383 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 TUBE1Q9UJT0 475 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 SQORQ9Y6N5 450 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 TTC3P53804 2025 aa13.85□□□□□ -0.19
SQSTM1-207ENST00000481335 WDR81Q562E7 1941 aa13.84□□□□□ -0.19
SQSTM1-207ENST00000481335 LOXHD1Q8IVV2 1947 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms