RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PTPN5P54829 565 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 ADAM17P78536 824 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 TRAF1Q13077 416 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 BTG3Q14201 252 aaPredicted RBP19.9■□□□□ 0.78
VIM-204ENST00000478746 IFIT1BQ5T764 474 aaKnown RBP19.9■□□□□ 0.78
VIM-204ENST00000478746 IER5LQ5T953 404 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 UTP14CQ5TAP6 766 aaKnown RBP19.9■□□□□ 0.78
VIM-204ENST00000478746 METTL7BQ6UX53 244 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 TRIM67Q6ZTA4 783 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 PRSS33Q8NF86 280 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 GPR20Q99678 358 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 UBAC1Q9BSL1 405 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 PLVAPQ9BX97 442 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 ALG13Q9NP73 1137 aaKnown RBP19.9■□□□□ 0.78
VIM-204ENST00000478746 ZNF215Q9UL58 517 aaPredicted RBP19.9■□□□□ 0.78
VIM-204ENST00000478746 ATG2AQ2TAZ0 1938 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 KAT6AQ92794 2004 aa19.9■□□□□ 0.78
VIM-204ENST00000478746 TMEM221A6NGB7 291 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 M0R296 226 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 MMP1P03956 469 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 GHRP10912 638 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 ICAM3P32942 547 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 NDUFV1P49821 464 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 PKN1Q16512 942 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 TRIM50Q86XT4 487 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 LMBR1Q8WVP7 490 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 PPP2R3CQ969Q6 453 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 PRRX2Q99811 253 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 KRT23Q9C075 422 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 EHMT1Q9H9B1 1298 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 PLAGL2Q9UPG8 496 aa19.89■□□□□ 0.77
VIM-204ENST00000478746 NRCAMQ92823 1304 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 SPATA31C2B4DYI2 1134 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 STAM2O75886 525 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 EYA4O95677 639 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 MRPS9P82933 396 aaKnown RBP19.88■□□□□ 0.77
VIM-204ENST00000478746 HOMER1Q86YM7 354 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 ZNF689Q96CS4 500 aaPredicted RBP19.88■□□□□ 0.77
VIM-204ENST00000478746 MSLNLQ96KJ4 702 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 RC3H2Q9HBD1 1191 aaKnown RBP19.88■□□□□ 0.77
VIM-204ENST00000478746 RTEL1Q9NZ71 1219 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 MAD2L2Q9UI95 211 aa19.88■□□□□ 0.77
VIM-204ENST00000478746 SUPT16HQ9Y5B9 1047 aaKnown RBP19.88■□□□□ 0.77
VIM-204ENST00000478746 ST18O60284 1047 aa19.87■□□□□ 0.77
VIM-204ENST00000478746 CAMK1Q14012 370 aa19.87■□□□□ 0.77
VIM-204ENST00000478746 IMMTQ16891 758 aaKnown RBP19.87■□□□□ 0.77
VIM-204ENST00000478746 RSPH3Q86UC2 560 aa19.87■□□□□ 0.77
VIM-204ENST00000478746 SUGP1Q8IWZ8 645 aaKnown RBP19.87■□□□□ 0.77
VIM-204ENST00000478746 P2RX5Q93086 422 aa19.87■□□□□ 0.77
VIM-204ENST00000478746 INPP4AQ96PE3 977 aaPredicted RBP19.87■□□□□ 0.77
VIM-204ENST00000478746 CNNM2Q9H8M5 875 aa19.87■□□□□ 0.77
VIM-204ENST00000478746 PALM3A6NDB9 673 aaPredicted RBP19.86■□□□□ 0.77
VIM-204ENST00000478746 FIBPO43427 364 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 DGKIO75912 1065 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 ZXDAP98168 799 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 SEMA3FQ13275 785 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 LPIN1Q14693 890 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 NAALADL2Q58DX5 795 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 TAF2Q6P1X5 1199 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 CWC27Q6UX04 472 aaKnown RBP19.86■□□□□ 0.77
VIM-204ENST00000478746 RUFY4Q6ZNE9 571 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 PIGSQ96S52 555 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 TELO2Q9Y4R8 837 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 TTC3P53804 2025 aa19.86■□□□□ 0.77
VIM-204ENST00000478746 LOC730098B7Z3J9 87 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 RRP1P56182 461 aaKnown RBP19.85■□□□□ 0.77
VIM-204ENST00000478746 SP4Q02446 784 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 MGAT3Q09327 533 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 EFHBQ8N7U6 833 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 SPPL3Q8TCT6 385 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 CLEC1BQ9P126 229 aa19.85■□□□□ 0.77
VIM-204ENST00000478746 BAZ2BQ9UIF8 2168 aaKnown RBP19.85■□□□□ 0.77
VIM-204ENST00000478746 DOCK5Q9H7D0 1870 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 DNAJB1P25685 340 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 SEC23AQ15436 765 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 FBXL6Q8N531 539 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 SMRP1Q8NCR6 262 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 SENP7Q9BQF6 1050 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 DSCC1Q9BVC3 393 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 RIOX1Q9H6W3 641 aa19.84■□□□□ 0.77
VIM-204ENST00000478746 MRPL42Q9Y6G3 142 aaKnown RBP19.84■□□□□ 0.77
VIM-204ENST00000478746 PNMA6FA0A0J9YX94 578 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 ITGB1P05556 798 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 TCF15Q12870 199 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 COASYQ13057 564 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 SLC35G1Q2M3R5 365 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 FBXO47Q5MNV8 452 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 ADGRD2Q7Z7M1 963 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 CMTR2Q8IYT2 770 aaKnown RBP19.83■□□□□ 0.77
VIM-204ENST00000478746 DNAJB3Q8WWF6 145 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 LNPKQ9C0E8 428 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 DIAPH3Q9NSV4 1193 aa19.83■□□□□ 0.77
VIM-204ENST00000478746 LAMA4Q16363 1823 aa19.83■□□□□ 0.76
VIM-204ENST00000478746 FRMPD4Q14CM0 1322 aa19.82■□□□□ 0.76
VIM-204ENST00000478746 USP34Q70CQ2 3546 aa19.82■□□□□ 0.76
VIM-204ENST00000478746 NRIP1P48552 1158 aa19.82■□□□□ 0.76
VIM-204ENST00000478746 PPFIA1Q13136 1202 aa19.82■□□□□ 0.76
VIM-204ENST00000478746 CBX2Q14781 532 aaPredicted RBP19.82■□□□□ 0.76
VIM-204ENST00000478746 TSHZ1Q6ZSZ6 1077 aa19.82■□□□□ 0.76
VIM-204ENST00000478746 RBM23Q86U06 439 aaKnown RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms