RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 CCDC169A6NNP5 214 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 CCDC188H7C350 402 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 XBP1P17861 261 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 MTIF2P46199 727 aaKnown RBP15.08■□□□□ 0
HDAC1-206ENST00000476391 NAB2Q15742 525 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 RTN1Q16799 776 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 CFAP61Q8NHU2 1237 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 ACTRT1Q8TDG2 376 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 DNAJC9Q8WXX5 260 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 VCX3BQ9H321 246 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 VCX3AQ9NNX9 186 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 FAM114A2Q9NRY5 505 aa15.08■□□□□ 0
HDAC1-206ENST00000476391 NKX1-2Q9UD57 310 aaPredicted RBP15.08■□□□□ 0
HDAC1-206ENST00000476391 ZMYND8Q9ULU4 1186 aaPredicted RBP15.08■□□□□ 0
HDAC1-206ENST00000476391 THRAP3Q9Y2W1 955 aaKnown RBP15.08■□□□□ 0
HDAC1-206ENST00000476391 AFDNP55196 1824 aaKnown RBP15.08■□□□□ 0
HDAC1-206ENST00000476391 GJB6O95452 261 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 SLC1A4P43007 532 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 CCDC152Q4G0S7 254 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 GIMAP8Q8ND71 665 aaPredicted RBP15.07■□□□□ 0
HDAC1-206ENST00000476391 ASAP3Q8TDY4 903 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 PIGOQ8TEQ8 1089 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 SH3TC2Q8TF17 1288 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 TAF4BQ92750 862 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 DUSP9Q99956 384 aaKnown RBP15.07■□□□□ 0
HDAC1-206ENST00000476391 PRAMEF22A3QJZ6 481 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 CYP27B1O15528 508 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 PEX11AO75192 247 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 ZPR1O75312 459 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 ECEL1O95672 775 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 FTCDO95954 541 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 SHBGP04278 402 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 CD151P48509 253 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 GFPT1Q06210 699 aaPredicted RBP15.07■□□□□ 0
HDAC1-206ENST00000476391 DZIP3Q86Y13 1208 aaKnown RBP15.07■□□□□ 0
HDAC1-206ENST00000476391 RBBP8NLQ8NC74 664 aaPredicted RBP15.07■□□□□ 0
HDAC1-206ENST00000476391 TBC1D16Q8TBP0 767 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 NDNQ99608 321 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 ARL2BPQ9Y2Y0 163 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.07■□□□□ 0
HDAC1-206ENST00000476391 GMEB1Q9Y692 573 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 LMTK3Q96Q04 1460 aa15.07■□□□□ 0
HDAC1-206ENST00000476391 KRT2P35908 639 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 SCNN1BP51168 640 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 RNASE9P60153 205 aaKnown RBP15.06■□□□□ 0
HDAC1-206ENST00000476391 EHHADHQ08426 723 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 CHADLQ6NUI6 762 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 CCDC84Q86UT8 332 aaPredicted RBP15.06■□□□□ 0
HDAC1-206ENST00000476391 ARHGAP18Q8N392 663 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 TXLNGYQ9BZA5 131 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 SLITRK6Q9H5Y7 841 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 ATP8A2Q9NTI2 1148 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 LRP6O75581 1613 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 RHOBTB3O94955 611 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 UNC5CO95185 931 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 AGTP01019 485 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 DNA2P51530 1060 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 RCAN1P53805 252 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 NLRP5P59047 1200 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 SF3A3Q12874 501 aaKnown RBP eCLIP15.06■□□□□ 06e-8■■■■■ 31.9
HDAC1-206ENST00000476391 ARHGAP27Q6ZUM4 889 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 TRIM42Q8IWZ5 723 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 MTFR1LQ9H019 292 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 SIK3Q9Y2K2 1263 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 LRCH1Q9Y2L9 728 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 CD2APQ9Y5K6 639 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 SLC4A7Q9Y6M7 1214 aa15.06■□□□□ 0
HDAC1-206ENST00000476391 FAM205CA6NFA0 338 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 LRRC53A6NM62 1247 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 DAPK3O43293 454 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 RXRBP28702 533 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 SH3BGRP55822 239 aaPredicted RBP15.05■□□□□ 0
HDAC1-206ENST00000476391 CCDC15Q0P6D6 951 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 PTGDRQ13258 359 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 CCDC178Q5BJE1 867 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 COL23A1Q86Y22 540 aaPredicted RBP15.05■□□□□ 0
HDAC1-206ENST00000476391 SYCP3Q8IZU3 236 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 USHBP1Q8N6Y0 703 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 TIPINQ9BVW5 301 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 EDEM3Q9BZQ6 932 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 GGT7Q9UJ14 662 aa15.05■□□□□ 0
HDAC1-206ENST00000476391 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.05■□□□□ -0
HDAC1-206ENST00000476391 ATP5HO75947 161 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 CCNE1P24864 410 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 PPP1R2P41236 205 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 ZC3H6P61129 1189 aaKnown RBP15.05■□□□□ -0
HDAC1-206ENST00000476391 TTC38Q5R3I4 469 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 FOXB2Q5VYV0 432 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 LMBR1LQ6UX01 489 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 CADPS2Q86UW7 1296 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 FITM2Q8N6M3 262 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 DYDC1Q8WWB3 177 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 LZICQ8WZA0 190 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 PTPRN2Q92932 1015 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 AZIN2Q96A70 460 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 STMN4Q9H169 189 aaPredicted RBP15.05■□□□□ -0
HDAC1-206ENST00000476391 LRRC4CQ9HCJ2 640 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 GALNT8Q9NY28 637 aa15.05■□□□□ -0
HDAC1-206ENST00000476391 FER1L4A9Z1Z3 1794 aa15.04■□□□□ -0
HDAC1-206ENST00000476391 RGS16O15492 202 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms