RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 REEP2Q9BRK0 252 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 MXRA8Q9BRK3 442 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 OLFML3Q9NRN5 406 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 EMILIN3Q9NT22 766 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 MYO1AQ9UBC5 1043 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 CNOT7Q9UIV1 285 aaKnown RBP10.88□□□□□ -0.67
USP39-214ENST00000474572 PPP1R9AQ9ULJ8 1098 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 TRAF3IP3Q9Y228 551 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 REXO2Q9Y3B8 237 aaKnown RBP10.88□□□□□ -0.67
USP39-214ENST00000474572 COL4A3BPQ9Y5P4 624 aa10.88□□□□□ -0.67
USP39-214ENST00000474572 SSC5DA1L4H1 1573 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 NPHP3-ACAD11A0A0J9YXS1 232 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 SLITRK3O94933 977 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 NDUFA10O95299 355 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 SSBP05455 408 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP39-214ENST00000474572 GAP43P17677 238 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 CASQ1P31415 396 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 KLK7P49862 253 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 USP14P54578 494 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 GNG11P61952 73 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 PABPC4Q13310 644 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP39-214ENST00000474572 NFIL3Q16649 462 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 HERC4Q5GLZ8 1057 aaPredicted RBP10.87□□□□□ -0.67
USP39-214ENST00000474572 LRCH2Q5VUJ6 765 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 DCAF15Q66K64 600 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 APOBEC3FQ8IUX4 373 aaKnown RBP10.87□□□□□ -0.67
USP39-214ENST00000474572 CCDC170Q8IYT3 715 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 SCYL3Q8IZE3 742 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 ACRBPQ8NEB7 543 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 HOOK2Q96ED9 719 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 AGBL1Q96MI9 1066 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 KCND2Q9NZV8 630 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 COL20A1Q9P218 1284 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 CCPG1Q9ULG6 757 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 BCS1LQ9Y276 419 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 UBIAD1Q9Y5Z9 338 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 MRFAP1Q9Y605 127 aa10.87□□□□□ -0.67
USP39-214ENST00000474572 EPN1Q9Y6I3 576 aaPredicted RBP10.87□□□□□ -0.67
USP39-214ENST00000474572 ASTN2O75129 1339 aaPredicted RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 UBE4BO95155 1302 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 ZNF541Q9H0D2 1346 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 PTPRFP10586 1907 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 A0A0U1RQJ8 604 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 EIF3CLB5ME19 914 aaKnown RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 NFIBO00712 420 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 PDXKO00764 312 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 EIF3DO15371 548 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP39-214ENST00000474572 ARP10275 920 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 VCAM1P19320 739 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 TRIM21P19474 475 aaKnown RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 ZNF131P52739 623 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 HERVK_113P62684 666 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 CACNB1Q02641 598 aaPredicted RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 KCNMA1Q12791 1236 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 TUBB2AQ13885 445 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 NBPF12Q5TAG4 269 aaPredicted RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 PCNX4Q63HM2 1172 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 RINT1Q6NUQ1 792 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 C1orf186Q6ZWK4 172 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 SAMD7Q7Z3H4 446 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 SFR1Q86XK3 245 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 REPS2Q8NFH8 660 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 ATRIPQ8WXE1 791 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 DYDC2Q96IM9 177 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 UIMC1Q96RL1 719 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 EIF3CQ99613 913 aaKnown RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 TUBB2BQ9BVA1 445 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 RUSC1Q9BVN2 902 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 TEKT3Q9BXF9 490 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 MAF1Q9H063 256 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 BHMT2Q9H2M3 363 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 UNC45AQ9H3U1 944 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 AGPAT5Q9NUQ2 364 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 RGL1Q9NZL6 768 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 CGNQ9P2M7 1197 aaKnown RBP10.86□□□□□ -0.67
USP39-214ENST00000474572 SEL1LQ9UBV2 794 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 FAM184BQ9ULE4 1060 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 PLAGL2Q9UPG8 496 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 PPP2R3BQ9Y5P8 575 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 LCTP09848 1927 aa10.86□□□□□ -0.67
USP39-214ENST00000474572 MYH11P35749 1972 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 OTOFQ9HC10 1997 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 TRAF5O00463 557 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 KIF5CO60282 957 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 GAS7O60861 476 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 TADA3O75528 432 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 URI1O94763 535 aaPredicted RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 KRT18P05783 430 aaKnown RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 ITGB5P18084 799 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 HOXD13P35453 343 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 CYLC1P35663 651 aaPredicted RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 CASP5P51878 434 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 CYP4A11Q02928 519 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 PPP2R3AQ06190 1150 aa10.85□□□□□ -0.67
USP39-214ENST00000474572 HSP90AA2PQ14568 343 aaPredicted RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 NAA30Q147X3 362 aaPredicted RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 KNOP1Q1ED39 458 aaKnown RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 TSR1Q2NL82 804 aaKnown RBP10.85□□□□□ -0.67
USP39-214ENST00000474572 TBC1D10BQ4KMP7 808 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms