RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PKD2L1Q9P0L9 805 aa21.27■■□□□ 1
COL7A1-209ENST00000474432 MICAL3Q7RTP6 2002 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 hCG_1984214I3L0E3 225 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 MAFGO15525 162 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 THPOP40225 353 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 METAP2P50579 478 aaKnown RBP eCLIP21.26■□□□□ 0.99
COL7A1-209ENST00000474432 ADCY7P51828 1080 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 NTRK3Q16288 839 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 PFKFB3Q16875 520 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-209ENST00000474432 SPRED2Q7Z698 418 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 ZNF713Q8N859 430 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-209ENST00000474432 LMBR1Q8WVP7 490 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 PCYT2Q99447 389 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 GAS2L1Q99501 681 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-209ENST00000474432 COL25A1Q9BXS0 654 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-209ENST00000474432 ANO3Q9BYT9 981 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 PRDM6Q9NQX0 595 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 KCNH7Q9NS40 1196 aa21.26■□□□□ 0.99
COL7A1-209ENST00000474432 VCANP13611 3396 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 SIP14410 1827 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 EPOPA6NHQ4 379 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 RSPH10B2B2RC85 870 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 LGR5O75473 907 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 RSPH10BP0C881 870 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 ARP10275 920 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 EVCP57679 992 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 TAP1Q03518 808 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 CRYGNQ8WXF5 182 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 SEPT1Q8WYJ6 367 aa21.25■□□□□ 0.99
COL7A1-209ENST00000474432 ZNF215Q9UL58 517 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-209ENST00000474432 ABHD14A-ACY1A0A1B0GW23 586 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 LCHNA4D1U4 455 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 RFXAPO00287 272 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 REC8O95072 547 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 FOSP01100 380 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-209ENST00000474432 SREBF1P36956 1147 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 ITGB3BPQ13352 177 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-209ENST00000474432 PLEKHG4Q58EX7 1191 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 DBF4BQ8NFT6 615 aa21.24■□□□□ 0.99
COL7A1-209ENST00000474432 NAP1L2Q9ULW6 460 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-209ENST00000474432 PRRC2BQ5JSZ5 2229 aaKnown RBP21.23■□□□□ 0.99
COL7A1-209ENST00000474432 MEIS1O00470 390 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 PRPF3O43395 683 aaKnown RBP21.23■□□□□ 0.99
COL7A1-209ENST00000474432 SCG2P13521 617 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 KCNJ6P48051 423 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 FGD1P98174 961 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 FAM26DQ5JW98 314 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 MARCH8Q5T0T0 291 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.23■□□□□ 0.99
COL7A1-209ENST00000474432 EHMT1Q9H9B1 1298 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 CERS4Q9HA82 394 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 EMSYQ7Z589 1322 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 NRCAMQ92823 1304 aa21.23■□□□□ 0.99
COL7A1-209ENST00000474432 REV3LO60673 3130 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 CCDC196A0A1B0GTZ2 297 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 ESYT2A0FGR8 921 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 EPB41L2O43491 1005 aaKnown RBP21.22■□□□□ 0.99
COL7A1-209ENST00000474432 CAND2O75155 1236 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 GNAT1P11488 350 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 ARHGAP4P98171 946 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 AP3B2Q13367 1082 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 TOB2Q14106 344 aaPredicted RBP21.22■□□□□ 0.99
COL7A1-209ENST00000474432 IKBKEQ14164 716 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 CEP55Q53EZ4 464 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 RUFY4Q6ZNE9 571 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 PHKBQ93100 1093 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 ZMYND12Q9H0C1 365 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 ZSWIM6Q9HCJ5 1215 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 AGO4Q9HCK5 861 aaKnown RBP21.22■□□□□ 0.99
COL7A1-209ENST00000474432 NFASCO94856 1347 aa21.22■□□□□ 0.99
COL7A1-209ENST00000474432 SPTBN5Q9NRC6 3674 aaKnown RBP21.21■□□□□ 0.99
COL7A1-209ENST00000474432 TLL1O43897 1013 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 GJB5O95377 273 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 CTSHP09668 335 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 POU3F3P20264 500 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-209ENST00000474432 IGFBP4P22692 258 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 MARK3P27448 753 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 PDIA3P30101 505 aaKnown RBP21.21■□□□□ 0.99
COL7A1-209ENST00000474432 JAKMIP3Q5VZ66 844 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 RPAINQ86UA6 219 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 PPM1EQ8WY54 764 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 JPH1Q9HDC5 661 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-209ENST00000474432 ERAP1Q9NZ08 941 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 SLC9A2Q9UBY0 812 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 TTC28Q96AY4 2481 aa21.21■□□□□ 0.99
COL7A1-209ENST00000474432 IGLV3-22A0A075B6J6 115 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 MBLAC1A4D2B0 266 aaPredicted RBP21.2■□□□□ 0.98
COL7A1-209ENST00000474432 KIF28PB7ZC32 967 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 FAM86B1E9PN63 330 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 EDIL3O43854 480 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 PPFIA3O75145 1194 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 ATG7O95352 703 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 CHRNA1P02708 482 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 FAM86B2P0C5J1 330 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 PSMA5P28066 241 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 RUFY3Q7L099 469 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 GLT8D2Q9H1C3 349 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 SMARCAD1Q9H4L7 1026 aa21.2■□□□□ 0.98
COL7A1-209ENST00000474432 COL4A4P53420 1690 aaPredicted RBP21.19■□□□□ 0.98
COL7A1-209ENST00000474432 DHX15O43143 795 aaKnown RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms