RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CHGBP05060 677 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 TGM1P22735 817 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 KCNJ6P48051 423 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 DGCR2P98153 550 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 FHL2Q14192 279 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 SLC10A6Q3KNW5 377 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 PAN2Q504Q3 1202 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 AGBL4Q5VU57 503 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 CD276Q5ZPR3 534 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 STPG3Q8N7X2 389 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 LMF1Q96S06 567 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 MRVI1Q9Y6F6 885 aa5.86□□□□□ -1.47
CCDC88A-212ENST00000474059 ACOT7O00154 380 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 MATN2O00339 956 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 DLX3O60479 287 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 MAP4K2Q12851 820 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 TUSC3Q13454 348 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 OTOP3Q7RTS5 596 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 FUKQ8N0W3 1084 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 UHMK1Q8TAS1 419 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 EDAQ92838 391 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 EXTL1Q92935 676 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 NEIL1Q96FI4 390 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 ADOQ96SZ5 270 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 GPR27Q9NS67 375 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 ACTR10Q9NZ32 417 aa5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 KIAA1522Q9P206 1035 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-212ENST00000474059 ZNF839A8K0R7 811 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 NKRFO15226 690 aaKnown RBP eCLIP5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 GLRBP48167 497 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 PPP2R2AP63151 447 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 PFKPQ01813 784 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 PRKD1Q15139 912 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 LARP1BQ659C4 914 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 TAX1BP1Q86VP1 789 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 REXO1L1PQ8IX06 675 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 ZNF341Q9BYN7 854 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 TGIF2Q9GZN2 237 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 LRP2BPQ9P2M1 347 aa5.84□□□□□ -1.47
CCDC88A-212ENST00000474059 A0A1W2PQU0 124 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 KRIT1O00522 736 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 NTRK3Q16288 839 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 RNF151Q2KHN1 245 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 USP39Q53GS9 565 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 TRIM48Q8IWZ4 208 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 CHFRQ96EP1 664 aa5.83□□□□□ -1.48
CCDC88A-212ENST00000474059 MAFKO60675 156 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 COL6A2P12110 1019 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 ETFBP38117 255 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 EPHA5P54756 1037 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 TMCO4Q5TGY1 634 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 AMER2Q8N7J2 671 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 SH3RF2Q8TEC5 729 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 PHF20Q9BVI0 1012 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 IKZF4Q9H2S9 585 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 ARHGAP20Q9P2F6 1191 aa5.82□□□□□ -1.48
CCDC88A-212ENST00000474059 RAD17O75943 681 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 ZNF202O95125 648 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 GJB6O95452 261 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 COMTP21964 271 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 TOP3AQ13472 1001 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 NOLC1Q14978 699 aaKnown RBP eCLIP5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 NRN1LQ496H8 165 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 FNDC7Q5VTL7 733 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 KCNT2Q6UVM3 1135 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 TACO1Q9BSH4 297 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 IER2Q9BTL4 223 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 PRKAG3Q9UGI9 489 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 INPP5FQ9Y2H2 1132 aa5.81□□□□□ -1.48
CCDC88A-212ENST00000474059 TCRBV5S4A2TA0A5A2 114 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 C1SP09871 688 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 MFAP1P55081 439 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 PTH1RQ03431 593 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 USP10Q14694 798 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 TBR1Q16650 682 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 MAMDC4Q6UXC1 1216 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 LBX2Q6XYB7 198 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 GIMAP8Q8ND71 665 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 IL17DQ8TAD2 202 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 KCTD13Q8WZ19 329 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 CFHR4Q92496 578 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 OAZ3Q9UMX2 235 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 SLC30A1Q9Y6M5 507 aa5.8□□□□□ -1.48
CCDC88A-212ENST00000474059 UNCXA6NJT0 531 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 H0Y858 1186 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 DDAH1O94760 285 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 FBXO21O94952 628 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 ENO2P09104 434 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 ACO1P21399 889 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 GRK2P25098 689 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 GRK3P35626 688 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 TGFB2P61812 414 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 HS1BP3Q53T59 392 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 PCSK4Q6UW60 755 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 RSPO2Q6UXX9 243 aaPredicted RBP5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 USP53Q70EK8 1073 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 CACTINQ8WUQ7 758 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 DPYSL5Q9BPU6 564 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 SLC39A2Q9NP94 309 aa5.79□□□□□ -1.48
CCDC88A-212ENST00000474059 C11orf21Q9P2W6 132 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms