RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 JPH1Q9HDC5 661 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-221ENST00000472563 SH3GLB2Q9NR46 395 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 PKD2L1Q9P0L9 805 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 NFASCO94856 1347 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 ZBBXA8MT70 800 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 CPLX1O14810 134 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 BAIAP3O94812 1187 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 ARP10275 920 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 ZNF76P36508 570 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 PBX2P40425 430 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 CPLX2Q6PUV4 134 aaKnown RBP13.64□□□□□ -0.23
SYNE1-221ENST00000472563 TRAF7Q6Q0C0 670 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 FAM177A1Q8N128 213 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-221ENST00000472563 SDF4Q9BRK5 362 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 SMARCAD1Q9H4L7 1026 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 AGO4Q9HCK5 861 aaKnown RBP13.64□□□□□ -0.23
SYNE1-221ENST00000472563 SETD4Q9NVD3 440 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 ERAP1Q9NZ08 941 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 SLC9A2Q9UBY0 812 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 MSRAQ9UJ68 235 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 NRCAMQ92823 1304 aa13.64□□□□□ -0.23
SYNE1-221ENST00000472563 ADAMTS3O15072 1205 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 TREHO43280 583 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 NBNO60934 754 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 PPFIA3O75145 1194 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 CAND2O75155 1236 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 LGR5O75473 907 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 ATP2A2P16615 1042 aaKnown RBP13.63□□□□□ -0.23
SYNE1-221ENST00000472563 ADAM17P78536 824 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 SSRP1Q08945 709 aaKnown RBP13.63□□□□□ -0.23
SYNE1-221ENST00000472563 ITGB3BPQ13352 177 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-221ENST00000472563 ZNF618Q5T7W0 954 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 PHOSPHO2Q8TCD6 241 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 GLG1Q92896 1179 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 LARP6Q9BRS8 491 aaKnown RBP13.63□□□□□ -0.23
SYNE1-221ENST00000472563 ZNF576Q9H609 170 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 PCDHA11Q9Y5I1 949 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 EMSYQ7Z589 1322 aa13.63□□□□□ -0.23
SYNE1-221ENST00000472563 IGLV3-22A0A075B6J6 115 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 RSPH10B2B2RC85 870 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 FAM86B1E9PN63 330 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 DEXIO95424 95 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 FAM86B2P0C5J1 330 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 RSPH10BP0C881 870 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 CIITAP33076 1130 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 THPOP40225 353 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 ACTR2P61160 394 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 STK3Q13188 491 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 MBTPS1Q14703 1052 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 GRIN2CQ14957 1233 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 CNKSR3Q6P9H4 555 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 PLA2G4DQ86XP0 818 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 LMBR1Q8WVP7 490 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 SLC9A7Q96T83 725 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 PCYT2Q99447 389 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 AZI2Q9H6S1 392 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 VPS54Q9P1Q0 977 aa13.62□□□□□ -0.23
SYNE1-221ENST00000472563 MYH6P13533 1939 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 DHX15O43143 795 aaKnown RBP13.61□□□□□ -0.23
SYNE1-221ENST00000472563 CDKL5O76039 1030 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 ATG7O95352 703 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 NLRP5P59047 1200 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 PPFIA1Q13136 1202 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 ANKRD1Q15327 319 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 PLPPR4Q7Z2D5 763 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 RPAINQ86UA6 219 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 MYLIPQ8WY64 445 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 TNPO1Q92973 898 aaKnown RBP13.61□□□□□ -0.23
SYNE1-221ENST00000472563 SLKQ9H2G2 1235 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-221ENST00000472563 SLC28A3Q9HAS3 691 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 TPCN1Q9ULQ1 816 aa13.61□□□□□ -0.23
SYNE1-221ENST00000472563 YBX2Q9Y2T7 364 aaKnown RBP13.61□□□□□ -0.23
SYNE1-221ENST00000472563 ABHD14A-ACY1A0A1B0GW23 586 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 MBLAC1A4D2B0 266 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-221ENST00000472563 IPO5O00410 1097 aaKnown RBP13.6□□□□□ -0.23
SYNE1-221ENST00000472563 PFKFB2O60825 505 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 EFCAB14O75071 495 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 CCNE2O96020 404 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 MARK3P27448 753 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 KCNJ6P48051 423 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 SLC26A2P50443 739 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 STAT5BP51692 787 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 RABGGTBP53611 331 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 SETQ01105 290 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-221ENST00000472563 SCRN1Q12765 414 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 IKBKEQ14164 716 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 GRIK4Q16099 956 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 TAF2Q6P1X5 1199 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 HERC6Q8IVU3 1022 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 RASGRP4Q8TDF6 673 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 C22orf23Q9BZE7 217 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 NKX2-4Q9H2Z4 354 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 TBC1D22BQ9NU19 505 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 PCDHA4Q9UN74 947 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 KIAA1217Q5T5P2 1943 aa13.6□□□□□ -0.23
SYNE1-221ENST00000472563 COL6A3P12111 3177 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 IGKV6D-21A0A0A0MT36 114 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 RRN3P2A6NIE6 340 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 USP11P51784 963 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms