RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 DTHD1Q6ZMT9 781 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 CYFIP1Q7L576 1253 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 CCDC60Q8IWA6 550 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-207ENST00000471342 KLHDC9Q8NEP7 349 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 SYMPKQ92797 1274 aaKnown RBP11.16□□□□□ -0.62
SF3A1-207ENST00000471342 KAT2BQ92831 832 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 EIF2AK1Q9BQI3 630 aaKnown RBP11.16□□□□□ -0.62
SF3A1-207ENST00000471342 C16orf70Q9BSU1 422 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 EHMT1Q9H9B1 1298 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 PKD2L1Q9P0L9 805 aa11.16□□□□□ -0.62
SF3A1-207ENST00000471342 MAFBQ9Y5Q3 323 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-207ENST00000471342 A6NJR5 290 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 SORBS3O60504 671 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 LYPLA2O95372 231 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 GGPS1O95749 300 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 TXNP10599 105 aaKnown RBP11.15□□□□□ -0.62
SF3A1-207ENST00000471342 PRMT2P55345 433 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 EPHA7Q15375 998 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 MTFR1Q15390 333 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 LONRF3Q496Y0 759 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 ZNF746Q6NUN9 644 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-207ENST00000471342 NLRX1Q86UT6 975 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 SLFN12Q8IYM2 578 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 SH3TC2Q8TF17 1288 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 SCFD2Q8WU76 684 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 POLR3CQ9BUI4 534 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-207ENST00000471342 PDLIM7Q9NR12 457 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 TBC1D22BQ9NU19 505 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 Q9Y3F1 56 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 KIAA1217Q5T5P2 1943 aa11.15□□□□□ -0.62
SF3A1-207ENST00000471342 GRIN2DO15399 1336 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 IGSF9BQ9UPX0 1349 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 CASP8AP2Q9UKL3 1982 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 TMEM150BA6NC51 233 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 HAS3O00219 553 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 SEPT4O43236 478 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 HMGCRP04035 888 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 INHAP05111 366 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 PRKAR2AP13861 404 aaKnown RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 NCLP19338 710 aaKnown RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 RPA1P27694 616 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 GRK4P32298 578 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 ZNF76P36508 570 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 ME1P48163 572 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 GJA9P57773 515 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 UBE2HP62256 183 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 KARSQ15046 597 aaKnown RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 TARBP2Q15633 366 aaKnown RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 ARSHQ5FYA8 562 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 CCAR1Q8IX12 1150 aaKnown RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 AFAP1L1Q8TED9 768 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 AFG1LQ8WV93 481 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 DYDC2Q96IM9 177 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 AK8Q96MA6 479 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 CTAGE1Q96RT6 745 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 PAK6Q9NQU5 681 aaPredicted RBP11.14□□□□□ -0.63
SF3A1-207ENST00000471342 SLC9A2Q9UBY0 812 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 CEP131Q9UPN4 1083 aa11.14□□□□□ -0.63
SF3A1-207ENST00000471342 POTEB3A0JP26 581 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 DDX39AO00148 427 aaKnown RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 SUPT20HL2P0C7V6 817 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 HOXD10P28358 340 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 HOXC8P31273 242 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 CTCFP49711 727 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 ADAM17P78536 824 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 TNFAIP2Q03169 654 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 CTTNQ14247 550 aaKnown RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 GNPTABQ3T906 1256 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 POTEBQ6S5H4 581 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 RBM43Q6ZSC3 357 aaKnown RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 ANO5Q75V66 913 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 TRIM50Q86XT4 487 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 SLAIN1Q8ND83 568 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 PPTC7Q8NI37 304 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 SPATA20Q8TB22 786 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 ARMC5Q96C12 935 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 CDHR1Q96JP9 859 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 TEKT3Q9BXF9 490 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 UNC93B1Q9H1C4 597 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 JPH1Q9HDC5 661 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 DISC1Q9NRI5 854 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 KBTBD4Q9NVX7 518 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 TMEM63CQ9P1W3 806 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 LRWD1Q9UFC0 647 aa11.13□□□□□ -0.63
SF3A1-207ENST00000471342 ZHX1Q9UKY1 873 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-207ENST00000471342 SYNRGQ9UMZ2 1314 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 GAS7O60861 476 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 DUSP11O75319 330 aaKnown RBP11.12□□□□□ -0.63
SF3A1-207ENST00000471342 PRR29P0C7W0 189 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 PLCG1P19174 1290 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 CST5P28325 142 aaPredicted RBP11.12□□□□□ -0.63
SF3A1-207ENST00000471342 SLC12A3P55017 1021 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 NEDD9Q14511 834 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 TTLL4Q14679 1199 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 KIF22Q14807 665 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 NCAPH2Q6IBW4 605 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 KCNV1Q6PIU1 500 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 POTEGQ6S5H5 508 aa11.12□□□□□ -0.63
SF3A1-207ENST00000471342 CTU1Q7Z7A3 348 aaKnown RBP11.12□□□□□ -0.63
SF3A1-207ENST00000471342 CABP7Q86V35 215 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms