RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HGSNATQ68CP4 663 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 NEK11Q8NG66 645 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 ZBTB12Q9Y330 459 aaPredicted RBP21.11■□□□□ 0.97
VIM-203ENST00000469543 MSH4O15457 936 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 PRPF6O94906 941 aaKnown RBP21.11■□□□□ 0.97
VIM-203ENST00000469543 ACTN1P12814 892 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 HNRNPH3P31942 346 aaKnown RBP21.11■□□□□ 0.97
VIM-203ENST00000469543 MATR3P43243 847 aaKnown RBP eCLIP21.11■□□□□ 0.97
VIM-203ENST00000469543 C2orf54Q08AI8 447 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 TDRD12Q587J7 1177 aaKnown RBP21.11■□□□□ 0.97
VIM-203ENST00000469543 HYIQ5T013 277 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 REEP2Q9BRK0 252 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 GREB1LQ9C091 1923 aaPredicted RBP21.1■□□□□ 0.97
VIM-203ENST00000469543 LRRIQ3A6PVS8 624 aaPredicted RBP21.1■□□□□ 0.97
VIM-203ENST00000469543 CHMP2AO43633 222 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 BMP3P12645 472 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 EZH2Q15910 746 aaKnown RBP21.1■□□□□ 0.97
VIM-203ENST00000469543 KCTD19Q17RG1 926 aaPredicted RBP21.1■□□□□ 0.97
VIM-203ENST00000469543 SYDE2Q5VT97 1194 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 CCDC65Q8IXS2 484 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 PURBQ96QR8 312 aaKnown RBP21.1■□□□□ 0.97
VIM-203ENST00000469543 BHMT2Q9H2M3 363 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 QSER1Q2KHR3 1735 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 CYP3A7-CYP3A51PA0A087WV96 503 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 RAD17O75943 681 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 CFBP00751 764 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 CYP3A7P24462 503 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 GIT2Q14161 759 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 FAM83BQ5T0W9 1011 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 NFRKBQ6P4R8 1299 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 CCDC174Q6PII3 467 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 MIGA2Q7L4E1 593 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 HDAC7Q8WUI4 952 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 PRR12Q9ULL5 1215 aa21.1■□□□□ 0.97
VIM-203ENST00000469543 MYBP10242 640 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 MYBL2P10244 700 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 TUBB2AQ13885 445 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 RBM26Q5T8P6 1007 aaKnown RBP21.09■□□□□ 0.97
VIM-203ENST00000469543 SFR1Q86XK3 245 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 CAGE1Q8TC20 777 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 TUBB2BQ9BVA1 445 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 LSM14BQ9BX40 385 aaKnown RBP21.09■□□□□ 0.97
VIM-203ENST00000469543 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.09■□□□□ 0.97
VIM-203ENST00000469543 PLSCR1O15162 318 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 ATP8B1O43520 1251 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 FGFR1OPO95684 399 aaKnown RBP21.09■□□□□ 0.97
VIM-203ENST00000469543 CDK17Q00537 523 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 CTTNQ14247 550 aaKnown RBP21.09■□□□□ 0.97
VIM-203ENST00000469543 LRRC27Q9C0I9 530 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 SH2D4AQ9H788 454 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 SERPINA10Q9UK55 444 aa21.09■□□□□ 0.97
VIM-203ENST00000469543 NR2F2P24468 414 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 MAGEA1P43355 309 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 CASP8Q14790 479 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 PDXDC1Q6P996 788 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 KSR1Q8IVT5 923 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 HNRNPLLQ8WVV9 542 aaKnown RBP21.08■□□□□ 0.97
VIM-203ENST00000469543 RUSC1Q9BVN2 902 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 PLEKHA4Q9H4M7 779 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 KDM3AQ9Y4C1 1321 aa21.08■□□□□ 0.97
VIM-203ENST00000469543 PPIP5K2O43314 1243 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 ZNF76P36508 570 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 USP14P54578 494 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 NAP1L1P55209 391 aaKnown RBP21.07■□□□□ 0.96
VIM-203ENST00000469543 ASTE1Q2TB18 679 aaPredicted RBP21.07■□□□□ 0.96
VIM-203ENST00000469543 CREG2Q8IUH2 290 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 TRIM59Q8IWR1 403 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 MBOAT7Q96N66 472 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.07■□□□□ 0.96
VIM-203ENST00000469543 DNM3Q9UQ16 869 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 CLIC2O15247 247 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 KIF20AO95235 890 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 SLC9A1P19634 815 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.07■□□□□ 0.96
VIM-203ENST00000469543 SLFN12Q8IYM2 578 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 FAM133AQ8N9E0 248 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 C7orf43Q8WVR3 580 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 GLIS2Q9BZE0 524 aaPredicted RBP21.07■□□□□ 0.96
VIM-203ENST00000469543 ADAMTS1Q9UHI8 967 aa21.07■□□□□ 0.96
VIM-203ENST00000469543 CASP4P49662 377 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 KCNH2Q12809 1159 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 ZNF662Q6ZS27 426 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 HDXQ7Z353 690 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 PACSIN1Q9BY11 444 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 RPA1P27694 616 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 PTPROQ16827 1216 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 GMCL1P1Q8NEA9 526 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 GMCL1Q96IK5 515 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 MS4A14Q96JA4 679 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.06■□□□□ 0.96
VIM-203ENST00000469543 MRIQ9BWK5 157 aa21.06■□□□□ 0.96
VIM-203ENST00000469543 SREBF1P36956 1147 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 SLC7A5Q01650 507 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 RAPGEF1Q13905 1077 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 EHBP1Q8NDI1 1231 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 WDR18Q9BV38 432 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 FBXO28Q9NVF7 368 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 VAV3Q9UKW4 847 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 PACSIN2Q9UNF0 486 aaPredicted RBP21.05■□□□□ 0.96
VIM-203ENST00000469543 USO1O60763 962 aaKnown RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms