RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FUT2Q10981 343 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 RTN1Q16799 776 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 PLEKHG4Q58EX7 1191 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 WWC2Q6AWC2 1192 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 PPP1R18Q6NYC8 613 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 TEX2Q8IWB9 1127 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 MICALL1Q8N3F8 863 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 DBF4BQ8NFT6 615 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 UHRF1Q96T88 793 aaPredicted RBP19■□□□□ 0.63
CCDC28B-204ENST00000469003 RAD9AQ99638 391 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 JADE2Q9NQC1 790 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 BRPF3Q9ULD4 1205 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 LCHNA4D1U4 455 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 HMGB1P09429 215 aaKnown RBP18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 TCF7P36402 384 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 ADAM17P78536 824 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 MKRN4PQ13434 485 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 MTMR1Q13613 665 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 LMBR1Q8WVP7 490 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 SEPT1Q8WYJ6 367 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 TSPYL2Q9H2G4 693 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 RIC8AQ9NPQ8 531 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 KAT6AQ92794 2004 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 NRCAMQ92823 1304 aa18.99■□□□□ 0.63
CCDC28B-204ENST00000469003 COL4A4P53420 1690 aaPredicted RBP18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 GSTTP1A0A1W2PQM5 241 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 GOLGA8AA7E2F4 631 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 GOLGA8BA8MQT2 603 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 hCG_1984214I3L0E3 225 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 RCAN1P53805 252 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 NAPAP54920 295 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 ARHGAP4P98171 946 aa18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 ZNF713Q8N859 430 aaPredicted RBP18.98■□□□□ 0.63
CCDC28B-204ENST00000469003 KLF18A0A0U1RQI7 1052 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 AMHP03971 560 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 CTSHP09668 335 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 FAM26DQ5JW98 314 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 TYW1BQ6NUM6 668 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 SPRED2Q7Z698 418 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 SEPT8Q92599 483 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 KCNB2Q92953 911 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 MXRA8Q9BRK3 442 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 FAM217BQ9NTX9 383 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 PKD2L1Q9P0L9 805 aa18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 V9GY48 417 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-204ENST00000469003 PRRC2BQ5JSZ5 2229 aaKnown RBP18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 RBAK-RBAKDNI3L0D1 243 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 STXBP3O00186 592 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 FOSP01100 380 aaPredicted RBP18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 ADCY7P51828 1080 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 GRB10Q13322 594 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 FAM117BQ6P1L5 589 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 SMARCAD1Q9H4L7 1026 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 ERAP1Q9NZ08 941 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 TRANK1O15050 2925 aa18.96■□□□□ 0.63
CCDC28B-204ENST00000469003 SIP14410 1827 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 LINC01553A4QN01 128 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 LPXNO60711 386 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 CDC27P30260 824 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 ERVK-21P61565 698 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 PPFIA1Q13136 1202 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 KRT40Q6A162 431 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 TAF2Q6P1X5 1199 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 RPAINQ86UA6 219 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 MYOCDQ8IZQ8 938 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 GLG1Q92896 1179 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 TGS1Q96RS0 853 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 ANO3Q9BYT9 981 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 OSBPL7Q9BZF2 842 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 GLT8D2Q9H1C3 349 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 JPH1Q9HDC5 661 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 KCNH7Q9NS40 1196 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 BARHL2Q9NY43 387 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 INSL6Q9Y581 213 aa18.95■□□□□ 0.62
CCDC28B-204ENST00000469003 SMCO2A6NFE2 343 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 MARK3P27448 753 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 FGD1P98174 961 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 AP3B2Q13367 1082 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 SKIV2LQ15477 1246 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 APBB2Q92870 758 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 PGBD1Q96JS3 809 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 LMCD1Q9NZU5 365 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 SLC9A2Q9UBY0 812 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 NFASCO94856 1347 aa18.94■□□□□ 0.62
CCDC28B-204ENST00000469003 TCF20Q9UGU0 1960 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 MBLAC1A4D2B0 266 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 CLK2P49760 499 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 METAP2P50579 478 aaKnown RBP eCLIP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 HTRA4P83105 476 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 GRIK4Q16099 956 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 CEP55Q53EZ4 464 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 RUFY4Q6ZNE9 571 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 CYP2W1Q8TAV3 490 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 GDPD5Q8WTR4 605 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 CCDC136Q96JN2 1154 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 JAKMIP1Q96N16 626 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 SDF4Q9BRK5 362 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 TUBE1Q9UJT0 475 aa18.93■□□□□ 0.62
CCDC28B-204ENST00000469003 NAP1L2Q9ULW6 460 aaPredicted RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms