RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 COL4A1P02462 1669 aa4.91□□□□□ -1.62
TMEM39A-204ENST00000468545 MYH3P11055 1940 aa4.91□□□□□ -1.62
TMEM39A-204ENST00000468545 SALL3Q9BXA9 1300 aa4.91□□□□□ -1.62
TMEM39A-204ENST00000468545 LAMB2P55268 1798 aa4.91□□□□□ -1.62
TMEM39A-204ENST00000468545 SPEF2Q9C093 1822 aa4.9□□□□□ -1.62
TMEM39A-204ENST00000468545 ZNF609O15014 1411 aa4.9□□□□□ -1.62
TMEM39A-204ENST00000468545 QSER1Q2KHR3 1735 aa4.9□□□□□ -1.62
TMEM39A-204ENST00000468545 SCO2A0A1W2PP80 73 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 DNAJA2O60884 412 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 CDC45O75419 566 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 MCAMP43121 646 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 NASPP49321 788 aaPredicted RBP4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 ARID5AQ03989 594 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 CCDC93Q567U6 631 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 BMP2KLQ5H9B9 411 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 OVOS1Q6IE37 1185 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 CASC1Q6TDU7 716 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 ARHGAP27Q6ZUM4 889 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF804AQ7Z570 1209 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 SLFN12Q8IYM2 578 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 MFSD2AQ8NA29 543 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 SPATA5Q8NB90 893 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 TMEM40Q8WWA1 233 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 EVI5LQ96CN4 794 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 MFSD14AQ96MC6 490 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 GMLQ99445 158 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 EYA3Q99504 573 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 HAUS7Q99871 368 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 DBNDD1Q9H9R9 158 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 PAG1Q9NWQ8 432 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 RAI14Q9P0K7 980 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 HMG20BQ9P0W2 317 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 ABCF2Q9UG63 623 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 PPT2Q9UMR5 302 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 AOX1Q06278 1338 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 ANKRD31Q8N7Z5 1873 aa4.9□□□□□ -1.63
TMEM39A-204ENST00000468545 C10orf71Q711Q0 1435 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CASZ1Q86V15 1759 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 PPIP5K2O43314 1243 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 IDH1O75874 414 aaKnown RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CHGBP05060 677 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 FGRP09769 529 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 DNAJA1P31689 397 aaKnown RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 ADMP35318 185 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CYP27A1Q02318 531 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 NMIQ13287 307 aaPredicted RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 RASGRF1Q13972 1273 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CPSF6Q16630 551 aaKnown RBP eCLIP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 AOC3Q16853 763 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CWC27Q6UX04 472 aaKnown RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 RTKN2Q8IZC4 609 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 FBXL6Q8N531 539 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 TOP6BLQ8N6T0 577 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 RBBP8NLQ8NC74 664 aaPredicted RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 SUPT20HQ8NEM7 779 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CYB5D2Q8WUJ1 264 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 DPH2Q9BQC3 489 aaPredicted RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 SYT17Q9BSW7 474 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 DUSP23Q9BVJ7 150 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 SRRTQ9BXP5 876 aaKnown RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 CD209Q9NNX6 404 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 PIH1D3Q9NQM4 214 aaKnown RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 PRDM10Q9NQV6 1147 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF277Q9NRM2 450 aaPredicted RBP4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 DIAPH3Q9NSV4 1193 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 LRP2BPQ9P2M1 347 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 DENND2AQ9ULE3 1009 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 NRXN2Q9P2S2 1712 aa4.89□□□□□ -1.63
TMEM39A-204ENST00000468545 SLC22A31A6NKX4 558 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 UPK3BL1B0FP48 263 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CHURC1-FNTBB4DL54 471 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 UPK3BL2E5RIL1 263 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 F8W031 263 aaPredicted RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 RNF113AO15541 343 aaKnown RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 SLITRK5O94991 958 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 F13BP05160 661 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 FAM87AP0C7U9 286 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CHMLP26374 656 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 EIF6P56537 245 aaKnown RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 TTF1Q15361 905 aaPredicted RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 GPR162Q16538 588 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CYP27C1Q4G0S4 372 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 SOGA3Q5TF21 947 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CDCP2Q5VXM1 449 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 FBXW10Q5XX13 1052 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 TTLL5Q6EMB2 1281 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 OGFOD3Q6PK18 319 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CCDC81Q6ZN84 652 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 NLRC3Q7RTR2 1065 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 MAGEB6Q8N7X4 407 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 KBTBD3Q8NAB2 608 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 OR6P1Q8NGX9 317 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 TDRD7Q8NHU6 1098 aaKnown RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 SHKBP1Q8TBC3 707 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 FAM227BQ96M60 508 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 SEC62Q99442 399 aaKnown RBP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 MIPEPQ99797 713 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.88□□□□□ -1.635e-8■■■□□ 16.7
TMEM39A-204ENST00000468545 MXD3Q9BW11 206 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms