RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HDXQ7Z353 690 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 ANKRD13CQ8N6S4 541 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 DRC1Q96MC2 740 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 CEP63Q96MT8 703 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 SALL4Q9UJQ4 1053 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 ANO9A1A5B4 782 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 FRMD3A2A2Y4 597 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 YDJCA8MPS7 323 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 MSH4O15457 936 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 RPA1P27694 616 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 ECE1P42892 770 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 USP14P54578 494 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 GYS2P54840 703 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 POLR2FP61218 127 aaKnown RBP9.88□□□□□ -0.83
SYNE1-217ENST00000466159 CYP4A11Q02928 519 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 GIT2Q14161 759 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 ASTE1Q2TB18 679 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-217ENST00000466159 FAM83BQ5T0W9 1011 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 SLC30A10Q6XR72 485 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 TRIM59Q8IWR1 403 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 LSM14BQ9BX40 385 aaKnown RBP9.88□□□□□ -0.83
SYNE1-217ENST00000466159 BCAS3Q9H6U6 928 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 PDE11AQ9HCR9 933 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 DNM3Q9UQ16 869 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE1-217ENST00000466159 PITPNM2Q9BZ72 1349 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 TLR2O60603 784 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 MAGEA1P43355 309 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TDRD12Q587J7 1177 aaKnown RBP9.87□□□□□ -0.83
SYNE1-217ENST00000466159 KIAA1755Q5JYT7 1200 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 WDR93Q6P2C0 686 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TRIM58Q8NG06 486 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 CAGE1Q8TC20 777 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 C7orf43Q8WVR3 580 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 REEP2Q9BRK0 252 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 CEP72Q9P209 647 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 PRR12Q9ULL5 1215 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 ATRNL1Q5VV63 1379 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 ERICH4A6NGS2 130 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TCP10L2B9ZVM9 353 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TBX3O15119 743 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 ENTPD3O75355 529 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TACC1O75410 805 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 ZMYND10O75800 440 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 GNA14O95837 355 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 FOSP01100 380 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-217ENST00000466159 MMP14P50281 582 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 MARSP56192 900 aaKnown RBP9.87□□□□□ -0.83
SYNE1-217ENST00000466159 RASSF7Q02833 373 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 CASP8Q14790 479 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 BTNL9Q6UXG8 535 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 SFR1Q86XK3 245 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 SYT2Q8N9I0 419 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-217ENST00000466159 ERMNQ8TAM6 284 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 TBC1D5Q92609 795 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 EDEM3Q9BZQ6 932 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 SNX12Q9UMY4 172 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 JRKLQ9Y4A0 524 aa9.87□□□□□ -0.83
SYNE1-217ENST00000466159 CLRN2A0PK11 232 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 RSPH10B2B2RC85 870 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 EML1O00423 815 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 SLC26A4O43511 780 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 N4BP1O75113 896 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 RSPH10BP0C881 870 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 NR2F2P24468 414 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 HOXD13P35453 343 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ZNF76P36508 570 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CKAP4Q07065 602 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 C2orf54Q08AI8 447 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 MAPK8IP2Q13387 824 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CC2D2BQ6DHV5 1058 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CREG2Q8IUH2 290 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ACER1Q8TDN7 264 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 COG1Q8WTW3 980 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 FAM20AQ96MK3 541 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 PSMB7Q99436 277 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 BHMT2Q9H2M3 363 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 RGL1Q9NZL6 768 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 VAV3Q9UKW4 847 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 LRRIQ3A6PVS8 624 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CETN3O15182 167 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 PPIP5K2O43314 1243 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 BUB1O43683 1085 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 PRPF6O94906 941 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 TUBBP07437 444 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 MYBP10242 640 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CIITAP33076 1130 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CYP2C19P33261 490 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ARID5AQ03989 594 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 KCNH2Q12809 1159 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ENOX2Q16206 610 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 SFMBT2Q5VUG0 894 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 MCTP2Q6DN12 878 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ZC3H3Q8IXZ2 948 aaKnown RBP9.86□□□□□ -0.83
SYNE1-217ENST00000466159 CNKSR1Q969H4 720 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 HINFPQ9BQA5 517 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 RUSC1Q9BVN2 902 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 GBP3Q9H0R5 595 aa9.86□□□□□ -0.83
SYNE1-217ENST00000466159 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms