RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 RNF168Q8IYW5 571 aaPredicted RBP8.43□□□□□ -1.06
USP54-210ENST00000466048 KIAA1524Q8TCG1 905 aa8.43□□□□□ -1.06
USP54-210ENST00000466048 PRMT6Q96LA8 375 aaPredicted RBP8.43□□□□□ -1.06
USP54-210ENST00000466048 HOXC6P09630 235 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 CYLC1P35663 651 aaPredicted RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 CCT6AP40227 531 aaKnown RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 GRIN1Q05586 938 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 HLTFQ14527 1009 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP54-210ENST00000466048 CCDC38Q502W7 563 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 MIER3Q7Z3K6 550 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 LRRC8AQ8IWT6 810 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 SPICE1Q8N0Z3 855 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 CCDC155Q8N6L0 562 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 SHISA4Q96DD7 197 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 DHTKD1Q96HY7 919 aaPredicted RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 DNM3Q9UQ16 869 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 LUC7L2Q9Y383 392 aaKnown RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 CCL15-CCL14A0A0B4J2E2 113 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 TBX3O15119 743 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 E2F4Q16254 413 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 CCL15Q16663 113 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 QRICH1Q2TAL8 776 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PDXDC2PQ6P474 469 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 BTNL9Q6UXG8 535 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 RRAGCQ9HB90 399 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 TESPA1A2RU30 521 aaPredicted RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 UNCXA6NJT0 531 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PLA2G6O60733 806 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 DDNO94850 711 aaPredicted RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 STAMBPO95630 424 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PRR29P0C7W0 189 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 STRN3Q13033 797 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 SH2D4BQ5SQS7 431 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 ZFYVE27Q5T4F4 411 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 SAMD7Q7Z3H4 446 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 IQCDQ96DY2 449 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 TEX13BQ9BXU2 312 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 VCPKMTQ9H867 229 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 ELP3Q9H9T3 547 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 KCNQ5Q9NR82 932 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 YDJCA8MPS7 323 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 AP5Z1O43299 807 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 FCGRTP55899 365 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 NCAPHQ15003 741 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 BRD3Q15059 726 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PPP2R5AQ15172 486 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 TYW1BQ6NUM6 668 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PPFIBP2Q8ND30 876 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 NSUN6Q8TEA1 469 aaKnown RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 NUP88Q99567 741 aaPredicted RBP8.42□□□□□ -1.06
USP54-210ENST00000466048 FANCLQ9NW38 375 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 PITPNM2Q9BZ72 1349 aa8.42□□□□□ -1.06
USP54-210ENST00000466048 NDUFB10O96000 172 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 STAT3P40763 770 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 TXKP42681 527 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 ASIC1P78348 528 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 PSMD2Q13200 908 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 KLHL10Q6JEL2 608 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 ZBTB8OSQ8IWT0 167 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 CHST13Q8NET6 341 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 RAET1EQ8TD07 263 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 CCDC51Q96ER9 411 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 FAM167AQ96KS9 214 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 SUDS3Q9H7L9 328 aaPredicted RBP8.41□□□□□ -1.06
USP54-210ENST00000466048 SLC8A1P32418 973 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 TFDP1Q14186 410 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 KARSQ15046 597 aaKnown RBP8.41□□□□□ -1.06
USP54-210ENST00000466048 STXBP2Q15833 593 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 XRRA1Q6P2D8 792 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 RNF207Q6ZRF8 634 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 RPAINQ86UA6 219 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 VSTM4Q8IW00 320 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 RETREG2Q8NC44 543 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 GMLQ99445 158 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 C7orf25Q9BPX7 421 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 ANO3Q9BYT9 981 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 VCXQ9H320 206 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 SPATS2LQ9NUQ6 558 aaKnown RBP8.41□□□□□ -1.06
USP54-210ENST00000466048 TMX2Q9Y320 296 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 PVALEFA0A1B0GWK0 134 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 ANKRD62A6NC57 917 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 TECP42680 631 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 VAV2P52735 878 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 PPP2R3AQ06190 1150 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 NOGQ13253 232 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 CCDC40Q4G0X9 1142 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 MIS18BP1Q6P0N0 1132 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 CROCCP2Q86T23 111 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.41□□□□□ -1.06
USP54-210ENST00000466048 CTNND2Q9UQB3 1225 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 PSME4Q14997 1843 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 PFASO15067 1338 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 SLC16A2P36021 539 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 KRT83P78385 493 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 NEDD9Q14511 834 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 USP49Q70CQ1 688 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 ZFPM1Q8IX07 1006 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 SNX29Q8TEQ0 813 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 NELFBQ8WX92 580 aa8.41□□□□□ -1.06
USP54-210ENST00000466048 MTIF3Q9H2K0 278 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms