RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 IGKV6D-21A0A0A0MT36 114 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 DCDC2CA8MYV0 355 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 H0YGN5 161 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 H3BRB1 525 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 LGR5O75473 907 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 CLTBP09497 229 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 KIAA0753Q2KHM9 967 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 ZNF746Q6NUN9 644 aaPredicted RBP23.02■■□□□ 1.28
SKA3-205ENST00000465471 TRIM50Q86XT4 487 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 NOSTRINQ8IVI9 506 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 PCYT2Q99447 389 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 TUT1Q9H6E5 874 aaKnown RBP23.02■■□□□ 1.28
SKA3-205ENST00000465471 TBX21Q9UL17 535 aa23.02■■□□□ 1.28
SKA3-205ENST00000465471 WNT7AO00755 349 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 B4GALT4O60513 344 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 CCNT1O60563 726 aaKnown RBP23.01■■□□□ 1.27
SKA3-205ENST00000465471 PSMD10O75832 226 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 HOXC8P31273 242 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 KRT76Q01546 638 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 B3GNT9Q6UX72 402 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 ABHD15Q6UXT9 468 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 UIMC1Q96RL1 719 aa23.01■■□□□ 1.27
SKA3-205ENST00000465471 WDR81Q562E7 1941 aa23■■□□□ 1.27
SKA3-205ENST00000465471 DDX39AO00148 427 aaKnown RBP23■■□□□ 1.27
SKA3-205ENST00000465471 KIAA0355O15063 1070 aa23■■□□□ 1.27
SKA3-205ENST00000465471 TBX3O15119 743 aa23■■□□□ 1.27
SKA3-205ENST00000465471 PRPF38BQ5VTL8 546 aaKnown RBP23■■□□□ 1.27
SKA3-205ENST00000465471 SH3RF1Q7Z6J0 888 aa23■■□□□ 1.27
SKA3-205ENST00000465471 HSCBQ8IWL3 235 aa23■■□□□ 1.27
SKA3-205ENST00000465471 PPP1R13LQ8WUF5 828 aa23■■□□□ 1.27
SKA3-205ENST00000465471 GTF2IRD1Q9UHL9 959 aa23■■□□□ 1.27
SKA3-205ENST00000465471 ZMYND8Q9ULU4 1186 aaPredicted RBP23■■□□□ 1.27
SKA3-205ENST00000465471 TRIM43BA6NCK2 446 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 TLR3O15455 904 aaKnown RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 SUPT20HL2P0C7V6 817 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 UTP14CQ5TAP6 766 aaKnown RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 LRCH2Q5VUJ6 765 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 POTEDQ86YR6 584 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 SMAP1Q8IYB5 467 aaPredicted RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 HAS1Q92839 578 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 GJA10Q969M2 543 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 TRIM43Q96BQ3 446 aaPredicted RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 FAM20AQ96MK3 541 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 CTAGE1Q96RT6 745 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 TRPV6Q9H1D0 765 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 TRMT13Q9NUP7 481 aaKnown RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 HDAC6Q9UBN7 1215 aa22.99■■□□□ 1.27
SKA3-205ENST00000465471 ZNF215Q9UL58 517 aaPredicted RBP22.99■■□□□ 1.27
SKA3-205ENST00000465471 GAS7O60861 476 aa22.98■■□□□ 1.27
SKA3-205ENST00000465471 SYN1P17600 705 aa22.98■■□□□ 1.27
SKA3-205ENST00000465471 LARP1BQ659C4 914 aaKnown RBP22.98■■□□□ 1.27
SKA3-205ENST00000465471 AFAP1L1Q8TED9 768 aa22.98■■□□□ 1.27
SKA3-205ENST00000465471 TEKT3Q9BXF9 490 aa22.98■■□□□ 1.27
SKA3-205ENST00000465471 SMARCAD1Q9H4L7 1026 aa22.98■■□□□ 1.27
SKA3-205ENST00000465471 TRAPPC10P48553 1259 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 ORC2Q13416 577 aaPredicted RBP22.97■■□□□ 1.27
SKA3-205ENST00000465471 HIC1Q14526 733 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 FAM47CQ5HY64 1035 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 GDF6Q6KF10 455 aaPredicted RBP22.97■■□□□ 1.27
SKA3-205ENST00000465471 PLPPR4Q7Z2D5 763 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 CCDC60Q8IWA6 550 aaPredicted RBP22.97■■□□□ 1.27
SKA3-205ENST00000465471 C7orf31Q8N865 590 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 UNC45AQ9H3U1 944 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 TMEM39AQ9NV64 488 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 ERAP1Q9NZ08 941 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 VAV3Q9UKW4 847 aa22.97■■□□□ 1.27
SKA3-205ENST00000465471 WDR64B1ANS9 1081 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 H3BQV1 296 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 SMIM10L2AP0DMW4 78 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 SMIM10L2BP0DMW5 78 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 PDCP20941 246 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 ITGB8P26012 769 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 GNL2Q13823 731 aaKnown RBP22.96■■□□□ 1.27
SKA3-205ENST00000465471 MIS18BP1Q6P0N0 1132 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 RNPEPQ9H4A4 650 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 PRDM5Q9NQX1 630 aaPredicted RBP22.96■■□□□ 1.27
SKA3-205ENST00000465471 PCDHA10Q9Y5I2 948 aa22.96■■□□□ 1.27
SKA3-205ENST00000465471 TRIP12Q14669 1992 aaPredicted RBP22.96■■□□□ 1.27
SKA3-205ENST00000465471 NEMFO60524 1076 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 SLC26A2P50443 739 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 TOB1P50616 345 aaPredicted RBP22.95■■□□□ 1.26
SKA3-205ENST00000465471 STAT5BP51692 787 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 CHMP4BP1P59074 171 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 PPP2R5CQ13362 524 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 RDM1Q8NG50 284 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 GLG1Q92896 1179 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 AZI2Q9H6S1 392 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 PCDH10Q9P2E7 1040 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 PRKAG2Q9UGJ0 569 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 TCEAL9Q9UHQ7 104 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 IGSF9BQ9UPX0 1349 aa22.95■■□□□ 1.26
SKA3-205ENST00000465471 MYH9P35579 1960 aaKnown RBP22.94■■□□□ 1.26
SKA3-205ENST00000465471 SFNP31947 248 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 JAK3P52333 1124 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 ADAM17P78536 824 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 SPIRE1Q08AE8 756 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 PTGISQ16647 500 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 TTC38Q5R3I4 469 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 SLFN12Q8IYM2 578 aa22.94■■□□□ 1.26
SKA3-205ENST00000465471 MTMR9Q96QG7 549 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms