RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 KIF2CQ99661 725 aa14.85□□□□□ -0.03
COL28A1-206ENST00000465339 ALG1Q9BT22 464 aa14.85□□□□□ -0.03
COL28A1-206ENST00000465339 HIPK3Q9H422 1215 aa14.85□□□□□ -0.03
COL28A1-206ENST00000465339 TUT1Q9H6E5 874 aaKnown RBP14.85□□□□□ -0.03
COL28A1-206ENST00000465339 TRMT13Q9NUP7 481 aaKnown RBP14.85□□□□□ -0.03
COL28A1-206ENST00000465339 KAT6AQ92794 2004 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 LGALS2P05162 132 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 USP11P51784 963 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 BLIDQ8IZY5 108 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 SEPT1Q8WYJ6 367 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 ZSCAN31Q96LW9 406 aaPredicted RBP14.84□□□□□ -0.03
COL28A1-206ENST00000465339 SDF4Q9BRK5 362 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 NOC4LQ9BVI4 516 aaKnown RBP14.84□□□□□ -0.03
COL28A1-206ENST00000465339 PPP1R12CQ9BZL4 782 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 PCDH10Q9P2E7 1040 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 ORC3Q9UBD5 711 aaPredicted RBP14.84□□□□□ -0.03
COL28A1-206ENST00000465339 NOD1Q9Y239 953 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 NFASCO94856 1347 aa14.84□□□□□ -0.03
COL28A1-206ENST00000465339 FAM86B1E9PN63 330 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 LARGE1O95461 756 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 FAM86B2P0C5J1 330 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 ARP10275 920 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 CIITAP33076 1130 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 PPIGQ13427 754 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL28A1-206ENST00000465339 PTGISQ16647 500 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 LRIT3Q3SXY7 679 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 PLA2G4DQ86XP0 818 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 RASGRP4Q8TDF6 673 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 AIFM3Q96NN9 605 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 PHF20Q9BVI0 1012 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 AGO4Q9HCK5 861 aaKnown RBP14.83□□□□□ -0.04
COL28A1-206ENST00000465339 PKD2L1Q9P0L9 805 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 HDAC6Q9UBN7 1215 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 SLC9A2Q9UBY0 812 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 GTF2IRD1Q9UHL9 959 aa14.83□□□□□ -0.04
COL28A1-206ENST00000465339 ZNF215Q9UL58 517 aaPredicted RBP14.83□□□□□ -0.04
COL28A1-206ENST00000465339 TRIP12Q14669 1992 aaPredicted RBP14.83□□□□□ -0.04
COL28A1-206ENST00000465339 IGLV3-22A0A075B6J6 115 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 GSTTP1A0A1W2PQM5 241 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 M0R2N6 131 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 CYP2C9P11712 490 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 CYP2C18P33260 490 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 TCF7P36402 384 aaPredicted RBP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 FXR1P51114 621 aaKnown RBP eCLIP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 SETQ01105 290 aaPredicted RBP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 SP4Q02446 784 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 BFSP2Q13515 415 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 RABEP1Q15276 862 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 GDF6Q6KF10 455 aaPredicted RBP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 CCDC155Q8N6L0 562 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 PPP1R13LQ8WUF5 828 aa14.82□□□□□ -0.04
COL28A1-206ENST00000465339 JPH1Q9HDC5 661 aaPredicted RBP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 RANBP2P49792 3224 aaKnown RBP14.82□□□□□ -0.04
COL28A1-206ENST00000465339 FDPSP14324 419 aaKnown RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 CSF2RAP15509 400 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 SHHQ15465 462 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 NPY5RQ15761 445 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 IER5LQ5T953 404 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 UTP14CQ5TAP6 766 aaKnown RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 KRT25Q7Z3Z0 450 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 RPUSD2Q8IZ73 545 aaKnown RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 RETREG2Q8NC44 543 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 NSUN7Q8NE18 718 aaKnown RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 CAGE1Q8TC20 777 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 LLPHQ9BRT6 129 aaKnown RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 SMARCAD1Q9H4L7 1026 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 SH2B1Q9NRF2 756 aaPredicted RBP14.81□□□□□ -0.04
COL28A1-206ENST00000465339 TBC1D22BQ9NU19 505 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 KCNJ14Q9UNX9 436 aa14.81□□□□□ -0.04
COL28A1-206ENST00000465339 C17orf102A2RUQ5 167 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 IPO5O00410 1097 aaKnown RBP14.8□□□□□ -0.04
COL28A1-206ENST00000465339 ST18O60284 1047 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 GNAT1P11488 350 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 EPHB4P54760 987 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 ACTR2P61160 394 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 PTK7Q13308 1070 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 ITGB3BPQ13352 177 aaPredicted RBP14.8□□□□□ -0.04
COL28A1-206ENST00000465339 NONOQ15233 471 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL28A1-206ENST00000465339 PRR16Q569H4 304 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 TBCKQ8TEA7 893 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 TNPO1Q92973 898 aaKnown RBP14.8□□□□□ -0.04
COL28A1-206ENST00000465339 ZNF577Q9BSK1 485 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 WNT8AQ9H1J5 351 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 AZI2Q9H6S1 392 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 IL23AQ9NPF7 189 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 ERAP1Q9NZ08 941 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 TELO2Q9Y4R8 837 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 GTF3C3Q9Y5Q9 886 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 UMODL1Q5DID0 1318 aa14.8□□□□□ -0.04
COL28A1-206ENST00000465339 CYP3A7-CYP3A51PA0A087WV96 503 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 CCDC194A0A1B0GVG4 234 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 DHX15O43143 795 aaKnown RBP14.79□□□□□ -0.04
COL28A1-206ENST00000465339 LGR5O75473 907 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 ATG7O95352 703 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 SMIM10L2AP0DMW4 78 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 SMIM10L2BP0DMW5 78 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 CYP3A7P24462 503 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 HOXC8P31273 242 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 RFC2P35250 354 aa14.79□□□□□ -0.04
COL28A1-206ENST00000465339 CCL23P55773 120 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms