RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 TMC5Q6UXY8 1006 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 ZNF852Q6ZMS4 543 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 EEPD1Q7L9B9 569 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 RASGRP2Q7LDG7 609 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CACNA2D4Q7Z3S7 1137 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CABP7Q86V35 215 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 POTEDQ86YR6 584 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 FMNL3Q8IVF7 1028 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 FBXO16Q8IX29 292 aaPredicted RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 SPICE1Q8N0Z3 855 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 PI4KAP1Q8N8J0 262 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 BBXQ8WY36 941 aaPredicted RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 TCEAL3Q969E4 200 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 KIF2CQ99661 725 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CHMP4AQ9BY43 222 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 FAM117AQ9C073 453 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 CCDC8Q9H0W5 538 aaPredicted RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 SH2D4AQ9H788 454 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 SFXN1Q9H9B4 322 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LRRC4CQ9HCJ2 640 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 VTA1Q9NP79 307 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 PDGFCQ9NRA1 345 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 HSPBP1Q9NZL4 362 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 EPS15L1Q9UBC2 864 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 ABCF2Q9UG63 623 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 GTF2IRD1Q9UHL9 959 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 DNMT3LQ9UJW3 386 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 ZNF214Q9UL59 606 aaPredicted RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 ADAMTS5Q9UNA0 930 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LZTS1Q9Y250 596 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 LAS1LQ9Y4W2 734 aaKnown RBP3.22□□□□□ -1.89
USP40-211ENST00000464956 SPTA1P02549 2419 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 DMDP11532 3685 aa3.22□□□□□ -1.89
USP40-211ENST00000464956 COL11A1P12107 1806 aaPredicted RBP3.21□□□□□ -1.89
USP40-211ENST00000464956 LNP1A1A4G5 178 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 A6NJR5 290 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 HIDE1A8MVS5 230 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 C2CD2LO14523 706 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 KHNYNO15037 678 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 NKRFO15226 690 aaKnown RBP eCLIP3.21□□□□□ -1.9
USP40-211ENST00000464956 CAND2O75155 1236 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 LUC7L3O95232 432 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 CAVIN2O95810 425 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 STAG3L1P0CL83 205 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 MYF5P13349 255 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PLCG2P16885 1265 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 CD72P21854 359 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 TARSP26639 723 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 ITPKBP27987 946 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 CA8P35219 290 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 RAP1GAPP47736 663 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 GPC5P78333 572 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 FOXO4P98177 505 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 KRT17Q04695 432 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 CYP4F3Q08477 520 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 APOBRQ0VD83 1088 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 HNRNPDQ14103 355 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 SMC1AQ14683 1233 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 TRIM71Q2Q1W2 868 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 HEATR6Q6AI08 1181 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 TAPT1Q6NXT6 567 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PCSK4Q6UW60 755 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 ATG14Q6ZNE5 492 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 ERICH6Q7L0X2 663 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.21□□□□□ -1.9
USP40-211ENST00000464956 TMC7Q7Z402 723 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 GPR149Q86SP6 731 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 ZC3H18Q86VM9 953 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 DHX37Q8IY37 1157 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 CMTR1Q8N1G2 835 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 CHST13Q8NET6 341 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 MRPS27Q92552 414 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 GLG1Q92896 1179 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 FGD4Q96M96 766 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PSMG3-AS1Q96PY0 264 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 KATNAL1Q9BW62 490 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PUS3Q9BZE2 481 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 WDR11Q9BZH6 1224 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 CHRDQ9H2X0 955 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PNNQ9H307 717 aaKnown RBP3.21□□□□□ -1.9
USP40-211ENST00000464956 CDHR5Q9HBB8 845 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PALD1Q9ULE6 856 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 PPP1R9AQ9ULJ8 1098 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 COG6Q9Y2V7 657 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 IGF2RP11717 2491 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 FBN3Q75N90 2809 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 MYO18BQ8IUG5 2567 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 ZMYM2Q9UBW7 1377 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 DOCK2Q92608 1830 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 WDR87Q6ZQQ6 2873 aa3.21□□□□□ -1.9
USP40-211ENST00000464956 C2CD3Q4AC94 2353 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 A0A1W2PRG0 241 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 CHL1O00533 1208 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MPHOSPH10O00566 681 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 CLASP2O75122 1294 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 RPP40O75818 363 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 BAG3O95817 575 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 AFPP02771 609 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 CCDC192P0DO97 292 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 CASTP20810 708 aaKnown RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms