RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GJB4Q9NTQ9 266 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 SPHKAPQ2M3C7 1700 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 GMNCA6NCL1 334 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 DRP2Q13474 957 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 E4F1Q66K89 784 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 NLRP10Q86W26 655 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 PDCD7Q8N8D1 485 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 OSBPL9Q96SU4 736 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 SYNGAP1Q96PV0 1343 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 CDC42BPAQ5VT25 1732 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 HECW2Q9P2P5 1572 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 SRGAP2O75044 1071 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 DYNLL1P63167 89 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 LLGL1Q15334 1064 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 TTLL3Q9Y4R7 772 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 DLATP10515 647 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 NSMCE1Q8WV22 266 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 PSD3Q9NYI0 1048 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 MAP3K7O43318 606 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 MMEP08473 750 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 DDIT3P35638 169 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 PIGSQ96S52 555 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 AP1M1Q9BXS5 423 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 SGK1O00141 431 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 SH3BP5O60239 455 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 PIK3CAP42336 1068 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 SNX1Q13596 522 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 TBC1D10CQ8IV04 446 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 ABCC3O15438 1527 aa20.54■□□□□ 0.88
CCDC88B-204ENST00000463837 CACNB1Q02641 598 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 NR1H3Q13133 447 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 RCN2Q14257 317 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 CCDC93Q567U6 631 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 TRIM50Q86XT4 487 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 EDEM3Q9BZQ6 932 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 IFT122Q9HBG6 1241 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 ADAMTS1Q9UHI8 967 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 PFKFB3Q16875 520 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 CYP4F22Q6NT55 531 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 NBPF10Q6P3W6 841 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 NLRP7Q8WX94 980 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 HVCN1Q96D96 273 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 FGFR1OP2Q9NVK5 253 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 SCYL2Q6P3W7 929 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 POLR1AO95602 1720 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 IGKV5-2P06315 115 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 PPP2R2AP63151 447 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 POMGNT1Q8WZA1 660 aa20.53■□□□□ 0.88
CCDC88B-204ENST00000463837 XDHP47989 1333 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 FGGP02679 453 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 PRCPP42785 496 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 EAPPQ56P03 285 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 SHC4Q6S5L8 630 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 SRLQ86TD4 932 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ATP6V1G3Q96LB4 118 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ITIH6Q6UXX5 1313 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 CNGA1P29973 690 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 RWDD2BP57060 319 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 CAV1Q03135 178 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ANKRD20A4Q4UJ75 823 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ANKRD20A8PQ5CZ79 823 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ANKRD20A2Q5SQ80 823 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ANKRD20A1Q5TYW2 823 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 LY9Q9HBG7 655 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 PALLDQ8WX93 1383 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 EXOC1LA0A1B0GW35 172 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 IPO5O00410 1097 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 MCAMP43121 646 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 TBC1D1Q86TI0 1168 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 SGMS1Q86VZ5 419 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 NLRP14Q86W24 1093 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 TBK1Q9UHD2 729 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 PPP2R5AQ15172 486 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 ARHGEF16Q5VV41 709 aa20.52■□□□□ 0.88
CCDC88B-204ENST00000463837 PXDNLA1KZ92 1463 aa20.52■□□□□ 0.87
CCDC88B-204ENST00000463837 RASGRF1Q13972 1273 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 PRR29P0C7W0 189 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 WDR24Q96S15 920 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 QRICH2Q9H0J4 1663 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 ERBB3P21860 1342 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 LPXNO60711 386 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 PLEKHA8P1O95397 391 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 MT-ND3P03897 115 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 GDAP1Q8TB36 358 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 PARVGQ9HBI0 331 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 FAF1Q9UNN5 650 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 CFAP73A6NFT4 308 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 EXOSC10Q01780 885 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 RPS6KA2Q15349 733 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 CYB5R4Q7L1T6 521 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 GSPT2Q8IYD1 628 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 LIMA1Q9UHB6 759 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 CAPN11Q9UMQ6 739 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 NEDD4P46934 1319 aa20.51■□□□□ 0.87
CCDC88B-204ENST00000463837 A0A1B0GTH6 734 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 LRRC53A6NM62 1247 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 H7C0C1 242 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms