RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 GPR20Q99678 358 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 PLVAPQ9BX97 442 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 CNNM2Q9H8M5 875 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 NRCAMQ92823 1304 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 SPATA31C2B4DYI2 1134 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 ENPP3O14638 875 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 TBX10O75333 385 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 CHRNA1P02708 482 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 MMP1P03956 469 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 GHRP10912 638 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 ICAM3P32942 547 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 GTF2F1P35269 517 aaKnown RBP eCLIP16.75■□□□□ 0.27
SMC1A-204ENST00000463684 NDUFV1P49821 464 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 LMBR1Q8WVP7 490 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 ALG13Q9NP73 1137 aaKnown RBP16.75■□□□□ 0.27
SMC1A-204ENST00000463684 MAD2L2Q9UI95 211 aa16.75■□□□□ 0.27
SMC1A-204ENST00000463684 MYH7BA7E2Y1 1941 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 TMEM221A6NGB7 291 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 M0R296 226 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 LINC01565O15544 149 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 FIBPO43427 364 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 LINC00271P0C7V0 271 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 ADAM17P78536 824 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 TAF2Q6P1X5 1199 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 CWC27Q6UX04 472 aaKnown RBP16.74■□□□□ 0.27
SMC1A-204ENST00000463684 TRIM67Q6ZTA4 783 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 TRIM50Q86XT4 487 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 SUGP1Q8IWZ8 645 aaKnown RBP16.74■□□□□ 0.27
SMC1A-204ENST00000463684 ZNF689Q96CS4 500 aaPredicted RBP16.74■□□□□ 0.27
SMC1A-204ENST00000463684 INPP4AQ96PE3 977 aaPredicted RBP16.74■□□□□ 0.27
SMC1A-204ENST00000463684 EHMT1Q9H9B1 1298 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 RTEL1Q9NZ71 1219 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 PLAGL2Q9UPG8 496 aa16.74■□□□□ 0.27
SMC1A-204ENST00000463684 PALM3A6NDB9 673 aaPredicted RBP16.73■□□□□ 0.27
SMC1A-204ENST00000463684 ST18O60284 1047 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 EYA4O95677 639 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 MRPS9P82933 396 aaKnown RBP16.73■□□□□ 0.27
SMC1A-204ENST00000463684 SP4Q02446 784 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 NAALADL2Q58DX5 795 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 PRSS33Q8NF86 280 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 P2RX5Q93086 422 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 PIGSQ96S52 555 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 PHOX2BQ99453 314 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 DIAPH3Q9NSV4 1193 aa16.73■□□□□ 0.27
SMC1A-204ENST00000463684 PNMA6FA0A0J9YX94 578 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 DGKIO75912 1065 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 LPIN1Q14693 890 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 IER5LQ5T953 404 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 GIMAP8Q8ND71 665 aaPredicted RBP16.72■□□□□ 0.27
SMC1A-204ENST00000463684 MSLNLQ96KJ4 702 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 DSCC1Q9BVC3 393 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 RIOX1Q9H6W3 641 aa16.72■□□□□ 0.27
SMC1A-204ENST00000463684 RC3H2Q9HBD1 1191 aaKnown RBP16.72■□□□□ 0.27
SMC1A-204ENST00000463684 SUPT16HQ9Y5B9 1047 aaKnown RBP16.72■□□□□ 0.27
SMC1A-204ENST00000463684 ZXDAP98168 799 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 RUFY4Q6ZNE9 571 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 EFHBQ8N7U6 833 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 SENP7Q9BQF6 1050 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 LNPKQ9C0E8 428 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 C5orf42Q9H799 3197 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 RALGAPA2Q2PPJ7 1873 aa16.71■□□□□ 0.27
SMC1A-204ENST00000463684 HIP1O00291 1037 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 RRP1P56182 461 aaKnown RBP16.7■□□□□ 0.26
SMC1A-204ENST00000463684 MGAT3Q09327 533 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 COASYQ13057 564 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 PPFIA1Q13136 1202 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 SEMA3FQ13275 785 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 HDAC1Q13547 482 aaPredicted RBP16.7■□□□□ 0.26
SMC1A-204ENST00000463684 CAMK1Q14012 370 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 SEC23AQ15436 765 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 FBXO47Q5MNV8 452 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 TSHZ1Q6ZSZ6 1077 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 NLRX1Q86UT6 975 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 CMTR2Q8IYT2 770 aaKnown RBP16.7■□□□□ 0.26
SMC1A-204ENST00000463684 FBXL6Q8N531 539 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 SMRP1Q8NCR6 262 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 SPPL3Q8TCT6 385 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 DNAJB3Q8WWF6 145 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 CLEC1BQ9P126 229 aa16.7■□□□□ 0.26
SMC1A-204ENST00000463684 MRPL42Q9Y6G3 142 aaKnown RBP16.7■□□□□ 0.26
SMC1A-204ENST00000463684 NLRC5Q86WI3 1866 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 TRIOO75962 3097 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 LOC730098B7Z3J9 87 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 ITGB1P05556 798 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 STAG3L1P0CL83 205 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 TCF7P36402 384 aaPredicted RBP16.69■□□□□ 0.26
SMC1A-204ENST00000463684 NRIP1P48552 1158 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 TRDNQ13061 729 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 XRRA1Q6P2D8 792 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 RBM23Q86U06 439 aaKnown RBP16.69■□□□□ 0.26
SMC1A-204ENST00000463684 KLHL23Q8NBE8 558 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 CUL5Q93034 780 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 FTHL17Q9BXU8 183 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 TUBE1Q9UJT0 475 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 TELO2Q9Y4R8 837 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 CDY2AQ9Y6F7 541 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 FRMPD4Q14CM0 1322 aa16.69■□□□□ 0.26
SMC1A-204ENST00000463684 ERICH2A1L162 156 aa16.68■□□□□ 0.26
SMC1A-204ENST00000463684 RPLP2P05387 115 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms