RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 V9GY48 417 aaPredicted RBP15.96■□□□□ 0.15
USP4-206ENST00000461553 PRRC2BQ5JSZ5 2229 aaKnown RBP15.95■□□□□ 0.14
USP4-206ENST00000461553 RSPH10B2B2RC85 870 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 MAFGO15525 162 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 TREHO43280 583 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 RSPH10BP0C881 870 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 RPS6KB1P23443 525 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 TRAF7Q6Q0C0 670 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 LMBR1Q8WVP7 490 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 PGBD1Q96JS3 809 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 RNPEPQ9H4A4 650 aa15.95■□□□□ 0.14
USP4-206ENST00000461553 JPH1Q9HDC5 661 aaPredicted RBP15.95■□□□□ 0.14
USP4-206ENST00000461553 ABHD14A-ACY1A0A1B0GW23 586 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 SMCO2A6NFE2 343 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 TLL1O43897 1013 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 ATP9AO75110 1047 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 LGR5O75473 907 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 CTSHP09668 335 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 SCG2P13521 617 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 IGFBP4P22692 258 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 ARHGAP4P98171 946 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 IKBKEQ14164 716 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 MBTPS1Q14703 1052 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 GPNMBQ14956 572 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 PFKFB3Q16875 520 aaPredicted RBP15.94■□□□□ 0.14
USP4-206ENST00000461553 USP38Q8NB14 1042 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 CCDC12Q8WUD4 166 aaPredicted RBP15.94■□□□□ 0.14
USP4-206ENST00000461553 SEPT1Q8WYJ6 367 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 MXRA8Q9BRK3 442 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 SDF4Q9BRK5 362 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 FAM217BQ9NTX9 383 aaPredicted RBP15.94■□□□□ 0.14
USP4-206ENST00000461553 SETD4Q9NVD3 440 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 ERAP1Q9NZ08 941 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 TELO2Q9Y4R8 837 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 NRCAMQ92823 1304 aa15.94■□□□□ 0.14
USP4-206ENST00000461553 RALGAPA2Q2PPJ7 1873 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 EPB41L2O43491 1005 aaKnown RBP15.93■□□□□ 0.14
USP4-206ENST00000461553 MARK3P27448 753 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 ADD1P35611 737 aaKnown RBP15.93■□□□□ 0.14
USP4-206ENST00000461553 SREBF1P36956 1147 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 DEFB103AP81534 67 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 AKAP17AQ02040 695 aaKnown RBP15.93■□□□□ 0.14
USP4-206ENST00000461553 PPFIA1Q13136 1202 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 PPM1EQ8WY54 764 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 GLG1Q92896 1179 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 ZBED2Q9BTP6 218 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 KCNH7Q9NS40 1196 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 SLC9A2Q9UBY0 812 aa15.93■□□□□ 0.14
USP4-206ENST00000461553 TTC28Q96AY4 2481 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 REV3LO60673 3130 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 ADGRE1Q14246 886 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 CEP55Q53EZ4 464 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 FBXL16Q8N461 479 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 SMARCAD1Q9H4L7 1026 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 AZI2Q9H6S1 392 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 EVPLQ92817 2033 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 NFASCO94856 1347 aa15.92■□□□□ 0.14
USP4-206ENST00000461553 SPTBN5Q9NRC6 3674 aaKnown RBP15.91■□□□□ 0.14
USP4-206ENST00000461553 GSTTP1A0A1W2PQM5 241 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 ESYT2A0FGR8 921 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 GTPBP6O43824 516 aaPredicted RBP15.91■□□□□ 0.14
USP4-206ENST00000461553 AMHP03971 560 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 ZNF76P36508 570 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 CLK2P49760 499 aaKnown RBP15.91■□□□□ 0.14
USP4-206ENST00000461553 TCTN1Q2MV58 587 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 TAF2Q6P1X5 1199 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 REXO1Q8N1G1 1221 aaKnown RBP15.91■□□□□ 0.14
USP4-206ENST00000461553 MICALL1Q8N3F8 863 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 CCDC148Q8NFR7 591 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 SEPT8Q92599 483 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 AGXT2Q9BYV1 514 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 CERS4Q9HA82 394 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 C6orf50Q9HD87 102 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 TMEM260Q9NX78 707 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 TUBE1Q9UJT0 475 aa15.91■□□□□ 0.14
USP4-206ENST00000461553 GJB5O95377 273 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 ADAM17P78536 824 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 TAP1Q03518 808 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 GRIK4Q16099 956 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 PLEKHG4Q58EX7 1191 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 JAKMIP3Q5VZ66 844 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 MCTP2Q6DN12 878 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 TMCO2Q7Z6W1 182 aaPredicted RBP15.9■□□□□ 0.14
USP4-206ENST00000461553 RSPH3Q86UC2 560 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 MYOCDQ8IZQ8 938 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 DBF4BQ8NFT6 615 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 ARNTL2Q8WYA1 636 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 COL25A1Q9BXS0 654 aaPredicted RBP15.9■□□□□ 0.14
USP4-206ENST00000461553 RNF26Q9BY78 433 aaPredicted RBP15.9■□□□□ 0.14
USP4-206ENST00000461553 AGO4Q9HCK5 861 aaKnown RBP15.9■□□□□ 0.14
USP4-206ENST00000461553 THEGQ9P2T0 379 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 NCOR1O75376 2440 aa15.9■□□□□ 0.14
USP4-206ENST00000461553 COL4A6Q14031 1691 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 BRWD1Q9NSI6 2320 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 PRPF3O43395 683 aaKnown RBP15.89■□□□□ 0.13
USP4-206ENST00000461553 GNA11P29992 359 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 ACTR2P61160 394 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 SETQ01105 290 aaPredicted RBP15.89■□□□□ 0.13
USP4-206ENST00000461553 CCDC85BQ15834 202 aaPredicted RBP15.89■□□□□ 0.13
USP4-206ENST00000461553 RUFY3Q7L099 469 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms