RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 PAPPA2Q9BXP8 1791 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 ZNF646O15015 1829 aaPredicted RBP9.1□□□□□ -0.95
USP54-208ENST00000461520 UTYO14607 1347 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 PTPRCP08575 1304 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 SASH1O94885 1247 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 PRAMEF13Q5VWM6 474 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 FBXO33Q7Z6M2 555 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 RASAL3Q86YV0 1011 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 LRRN4CLQ8ND94 238 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 SCAF8Q9UPN6 1271 aaKnown RBP9.1□□□□□ -0.95
USP54-208ENST00000461520 MAPK8IP1Q9UQF2 711 aa9.1□□□□□ -0.95
USP54-208ENST00000461520 PLIN1O60240 522 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 NBPF7P0C2Y1 421 aaPredicted RBP9.09□□□□□ -0.95
USP54-208ENST00000461520 CAP2P40123 477 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 IKZF1Q13422 519 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 UBE4AQ14139 1066 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 DLGAP5Q15398 846 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 PRAMEF18Q5VWM3 479 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 OGFOD2Q6N063 350 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 CERS5Q8N5B7 392 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 MFSD2AQ8NA29 543 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 ASB11Q8WXH4 323 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 KAZALD1Q96I82 304 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 SUCLG2Q96I99 432 aa9.09□□□□□ -0.95
USP54-208ENST00000461520 COL1A1P02452 1464 aaPredicted RBP9.08□□□□□ -0.96
USP54-208ENST00000461520 UBE2Q2LH0YL09 131 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 MYO1BO43795 1136 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 CST3P01034 146 aaPredicted RBP9.08□□□□□ -0.96
USP54-208ENST00000461520 SLFN5Q08AF3 891 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 RABL6Q3YEC7 729 aaPredicted RBP9.08□□□□□ -0.96
USP54-208ENST00000461520 SFRP5Q5T4F7 317 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 LETMD1Q6P1Q0 360 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 MOB2Q70IA6 237 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 ARMC9Q7Z3E5 817 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 SSH1Q8WYL5 1049 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 DPH2Q9BQC3 489 aaPredicted RBP9.08□□□□□ -0.96
USP54-208ENST00000461520 RIPOR2Q9Y4F9 1068 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 PPP2R3BQ9Y5P8 575 aa9.08□□□□□ -0.96
USP54-208ENST00000461520 FAM205AQ6ZU69 1335 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 MROH5Q6ZUA9 1318 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 A0A1B0GUL6 1792 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 F8W031 263 aaPredicted RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 BIN1O00499 593 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 PGRP06401 933 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 HIBADHP31937 336 aaKnown RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 ZP2Q05996 745 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 TSNAXIP1Q2TAA8 658 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 ALDH1L2Q3SY69 923 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 CFAP100Q494V2 611 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 CDKAL1Q5VV42 579 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 SLC23A3Q6PIS1 610 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 CTU1Q7Z7A3 348 aaKnown RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 ATG4DQ86TL0 474 aaPredicted RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 PHC3Q8NDX5 983 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 TDRD7Q8NHU6 1098 aaKnown RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 HSPA12BQ96MM6 686 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 NOC4LQ9BVI4 516 aaKnown RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 GZF1Q9H116 711 aaPredicted RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 DEFB129Q9H1M3 183 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 BICC1Q9H694 974 aaKnown RBP9.07□□□□□ -0.96
USP54-208ENST00000461520 TJP2Q9UDY2 1190 aa9.07□□□□□ -0.96
USP54-208ENST00000461520 UNCXA6NJT0 531 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 GYG1P46976 350 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 TM4SF4P48230 202 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 ST13P50502 369 aaKnown RBP9.06□□□□□ -0.96
USP54-208ENST00000461520 CLCN7P51798 805 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 MFSD14BQ5SR56 506 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 LDLRAD1Q5T700 205 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 CDH24Q86UP0 819 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 ANKRD44Q8N8A2 993 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 FAM84BQ96KN1 310 aaPredicted RBP9.06□□□□□ -0.96
USP54-208ENST00000461520 PRMT6Q96LA8 375 aaPredicted RBP9.06□□□□□ -0.96
USP54-208ENST00000461520 PUS3Q9BZE2 481 aaKnown RBP9.06□□□□□ -0.96
USP54-208ENST00000461520 USP44Q9H0E7 712 aa9.06□□□□□ -0.96
USP54-208ENST00000461520 PDE8BO95263 885 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 CBX7O95931 251 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 CT47B1P0C2W7 299 aaPredicted RBP9.05□□□□□ -0.96
USP54-208ENST00000461520 RLBP1P12271 317 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 RBM5P52756 815 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP54-208ENST00000461520 RPL6Q02878 288 aaKnown RBP9.05□□□□□ -0.96
USP54-208ENST00000461520 SREBF2Q12772 1141 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 PRKG1Q13976 671 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 SUPT20HL1Q3ZLR7 823 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 CAVIN4Q5BKX8 364 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 METTL24Q5JXM2 366 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 VPS37DQ86XT2 251 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 TRMT2AQ8IZ69 625 aaKnown RBP9.05□□□□□ -0.96
USP54-208ENST00000461520 MFSD4AQ8N468 514 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 ATP13A1Q9HD20 1204 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 JAG2Q9Y219 1238 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 PCDHAC2Q9Y5I4 1007 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 TACC3Q9Y6A5 838 aa9.05□□□□□ -0.96
USP54-208ENST00000461520 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
USP54-208ENST00000461520 CLRN2A0PK11 232 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 TBC1D8O95759 1140 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 ZNF865P0CJ78 1059 aaPredicted RBP9.04□□□□□ -0.96
USP54-208ENST00000461520 INHBEP58166 350 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 TNFAIP1Q13829 316 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 LRRC24Q50LG9 513 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 BNC2Q6ZN30 1099 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms