RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CNNM4Q6P4Q7 775 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 LRIG3Q6UXM1 1119 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 RUFY4Q6ZNE9 571 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 BZW1Q7L1Q6 419 aaKnown RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 KCNK18Q7Z418 384 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 TMC3Q7Z5M5 1100 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 FMNL3Q8IVF7 1028 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 MGARPQ8TDB4 240 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 PARD3BQ8TEW8 1205 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 LRRC45Q96CN5 670 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 ZBTB10Q96DT7 871 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 VAT1LQ9HCJ6 419 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 TSKSQ9UJT2 592 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 F8VZ95 297 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 TRAF5O00463 557 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CYTH3O43739 400 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 DNAJC8O75937 253 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC84Q86UT8 332 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC50Q8IVM0 306 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 PRMT1Q99873 361 aaKnown RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 C7orf25Q9BPX7 421 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 TMEM59LQ9UK28 342 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 ZBTB1Q9Y2K1 713 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 PCDHGC5Q9Y5F6 944 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 MYH7BA7E2Y1 1941 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 KCPQ6ZWJ8 1503 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 USP17L3A6NCW0 530 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 USP17L4A6NCW7 530 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 POTEMA6NI47 508 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 PRPF4BQ13523 1007 aaKnown RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 LRRC14Q15048 493 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 RCSD1Q6JBY9 416 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 TMED8Q6PL24 325 aaPredicted RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 USP17L1Q7RTZ2 530 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 DYNLL2Q96FJ2 89 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 YIPF3Q9GZM5 350 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 ARHGEF10LQ9HCE6 1279 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 ATP6V0A2Q9Y487 856 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 MROH5Q6ZUA9 1318 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 SERPING1P05155 500 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 OR52Z1P0C646 297 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 BIRC3Q13489 604 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 SLC18A3Q16572 532 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 TBC1D22AQ8WUA7 517 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 AZI2Q9H6S1 392 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 BLOC1S4Q9NUP1 217 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 TMEM260Q9NX78 707 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 RNF14Q9UBS8 474 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 ANAPC4Q9UJX5 808 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 C15orf41Q9Y2V0 281 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 SSU72P8A0A1W2PR75 194 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 UBOX5O94941 541 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 CALML3P27482 149 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 PTK2Q05397 1052 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 ERMARDQ5T6L9 678 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF483Q8TF39 744 aaPredicted RBP12.8□□□□□ -0.36
CPSF3-202ENST00000460593 SCFD2Q8WU76 684 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 MTA3Q9BTC8 594 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 KDM4CQ9H3R0 1056 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 TRPC6Q9Y210 931 aa12.8□□□□□ -0.36
CPSF3-202ENST00000460593 ALDH5A1P51649 535 aaPredicted RBP12.79□□□□□ -0.36
CPSF3-202ENST00000460593 ERICH1Q86X53 443 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 KSR1Q8IVT5 923 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 GLG1Q92896 1179 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 FAM129AQ9BZQ8 928 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 M0R2N6 131 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 GRB10Q13322 594 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF571Q7Z3V5 609 aaPredicted RBP12.79□□□□□ -0.36
CPSF3-202ENST00000460593 DAAM2Q86T65 1068 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF317Q96PQ6 595 aaPredicted RBP12.79□□□□□ -0.36
CPSF3-202ENST00000460593 TMOD3Q9NYL9 352 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 BIN2Q9UBW5 565 aaPredicted RBP12.79□□□□□ -0.36
CPSF3-202ENST00000460593 A0A0G2JS52 829 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 AP1G2O75843 785 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 USP17L8P0C7I0 530 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 TFAP4Q01664 338 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 CHRNDQ07001 517 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 CUL1Q13616 776 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 SV2BQ7L1I2 683 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 PNMA1Q8ND90 353 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 C1orf131Q8NDD1 294 aaKnown RBP12.79□□□□□ -0.36
CPSF3-202ENST00000460593 MAGEC3Q8TD91 643 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 PNMA3Q9UL41 463 aa12.79□□□□□ -0.36
CPSF3-202ENST00000460593 PCDH11XQ9BZA7 1347 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 PCDH11YQ9BZA8 1340 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 NPHP3-ACAD11A0A0J9YXS1 232 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SPDYE3A6NKU9 549 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 ERVV-2B6SEH9 535 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 RBAK-RBAKDNI3L0D1 243 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 PGRMC1O00264 195 aaKnown RBP12.78□□□□□ -0.36
CPSF3-202ENST00000460593 GRIK3Q13003 919 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF211Q13398 564 aaPredicted RBP12.78□□□□□ -0.36
CPSF3-202ENST00000460593 AGBL2Q5U5Z8 902 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SUSD4Q5VX71 490 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 AADACL2Q6P093 401 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 TAX1BP1Q86VP1 789 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 EGFL6Q8IUX8 553 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SLC44A5Q8NCS7 719 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 PNMA5Q96PV4 448 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 ADAM7Q9H2U9 754 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms