RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	DHX40	Q8IX18	779 aa	Known RBP	9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	ANKRD35	Q8N283	1001 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	NPLOC4	Q8TAT6	608 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	AK8	Q96MA6	479 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	MMP19	Q99542	508 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	EIF2AK1	Q9BQI3	630 aa	Known RBP	9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	ZNF577	Q9BSK1	485 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	HSD3B7	Q9H2F3	369 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	KBTBD4	Q9NVX7	518 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	ABT1	Q9ULW3	272 aa	Known RBP	9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	PCDHA12	Q9UN75	941 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	GDA	Q9Y2T3	454 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	MGAM	O43451	1857 aa		9.82	□□□□□ -0.84
RIF1-208	ENST00000457745	GOLGA6L3	A6NEY3	463 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	TMEM88B	A6NKF7	163 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	IPO5	O00410	1097 aa	Known RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	STBD1	O95210	358 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	CCND2	P30279	289 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	NLRP12	P59046	1061 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	PABPC4	Q13310	644 aa	Known RBP eCLIP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	PPP2R5C	Q13362	524 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	MTMR1	Q13613	665 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	NCAPH	Q15003	741 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	ARSH	Q5FYA8	562 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	GJC2	Q5T442	439 aa	Predicted RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	WDR78	Q5VTH9	848 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	NIPA1	Q7RTP0	329 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	TEX2	Q8IWB9	1127 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	FBXO16	Q8IX29	292 aa	Predicted RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	SAMD3	Q8N6K7	520 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	BANK1	Q8NDB2	785 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	SHCBP1	Q8NEM2	672 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	GPRC5A	Q8NFJ5	357 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	NSUN6	Q8TEA1	469 aa	Known RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	SMCR8	Q8TEV9	937 aa	Predicted RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	RAD54L	Q92698	747 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	COPS5	Q92905	334 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	FAM20A	Q96MK3	541 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	NAP1L4	Q99733	375 aa	Known RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	HSD17B14	Q9BPX1	270 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	ARHGAP39	Q9C0H5	1083 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	KATNBL1	Q9H079	304 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	PDGFC	Q9NRA1	345 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	MAP3K20	Q9NYL2	800 aa	Known RBP	9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	KIAA1024	Q9UPX6	916 aa		9.81	□□□□□ -0.84
RIF1-208	ENST00000457745	MANSC4	A6NHS7	340 aa	Predicted RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	SPATA31C2	B4DYI2	1134 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	CTAGE5	O15320	804 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	ADCY6	O43306	1168 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	GAS7	O60861	476 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	TOMM70	O94826	608 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	SLITRK3	O94933	977 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	SLC25A27	O95847	323 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	UBA1	P22314	1058 aa	Known RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	ADORA2A	P29274	412 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	CRHR2	Q13324	411 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	TAF1C	Q15572	869 aa	Predicted RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	STX1A	Q16623	288 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	TMEM266	Q2M3C6	531 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	ZNF792	Q3KQV3	632 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	C17orf99	Q6UX52	265 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	MAMDC4	Q6UXC1	1216 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	GPR142	Q7Z601	462 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	ELOA2	Q8IYF1	753 aa	Predicted RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	TRMT44	Q8IYL2	757 aa	Known RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	SLFN12	Q8IYM2	578 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	IQUB	Q8NA54	791 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	DNAJC19	Q96DA6	116 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	PARK7	Q99497	189 aa	Known RBP	9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	SH2D3A	Q9BRG2	576 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	RUSC1	Q9BVN2	902 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	TRIM9	Q9C026	710 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	EHMT1	Q9H9B1	1298 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	FLRT1	Q9NZU1	646 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	PNMA3	Q9UL41	463 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	PNMA2	Q9UL42	364 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	PFAS	O15067	1338 aa		9.8	□□□□□ -0.84
RIF1-208	ENST00000457745	THSD7B	Q9C0I4	1608 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	RSPH10B2	B2RC85	870 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	PPP1R3G	B7ZBB8	358 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	NKRF	O15226	690 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	ZNF862	O60290	1169 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	MARCH6	O60337	910 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	LETM1	O95202	739 aa	Predicted RBP	9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	RPN1	P04843	607 aa	Known RBP	9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	RSPH10B	P0C881	870 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	CCDC192	P0DO97	292 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	FCER1A	P12319	257 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	CYP11B2	P19099	503 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	SLC12A3	P55017	1021 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	SET	Q01105	290 aa	Predicted RBP	9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	SP4	Q02446	784 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	RAD51AP2	Q09MP3	1159 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	GRB14	Q14449	540 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	FAM110C	Q1W6H9	321 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	KMT5B	Q4FZB7	885 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	KRT79	Q5XKE5	535 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	SASS6	Q6UVJ0	657 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	SEPT14	Q6ZU15	432 aa		9.79	□□□□□ -0.84
RIF1-208	ENST00000457745	DYM	Q7RTS9	669 aa		9.79	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms