RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 CCT2P78371 535 aaKnown RBP18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 PKN1Q16512 942 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 JAKMIP3Q5VZ66 844 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 CNKSR3Q6P9H4 555 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 RUFY3Q7L099 469 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 HERC6Q8IVU3 1022 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 SEPT1Q8WYJ6 367 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 NCOA5Q9HCD5 579 aaKnown RBP18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 KCNH7Q9NS40 1196 aa18.8■□□□□ 0.6
NCKIPSD-208ENST00000454134 RSPH10B2B2RC85 870 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 CTSHP09668 335 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 RSPH10BP0C881 870 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 PDIA3P30101 505 aaKnown RBP18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 SREBF1P36956 1147 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 KCNJ6P48051 423 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 WDR5P61964 334 aaKnown RBP18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 DEFB103AP81534 67 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 ARHGAP4P98171 946 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 ADGRE1Q14246 886 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 USP38Q8NB14 1042 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 PHOSPHO2Q8TCD6 241 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 LMBR1Q8WVP7 490 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 GAS2L1Q99501 681 aaPredicted RBP18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 LARP6Q9BRS8 491 aaKnown RBP18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 ZSWIM6Q9HCJ5 1215 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 A0A0C4DFX4 3053 aa18.79■□□□□ 0.6
NCKIPSD-208ENST00000454134 PTPRSQ13332 1948 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 DLL1O00548 723 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 MAFGO15525 162 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 PRPF3O43395 683 aaKnown RBP18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 ARHGEF15O94989 841 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 GNAT1P11488 350 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 AP3B2Q13367 1082 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 TOB2Q14106 344 aaPredicted RBP18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 NTRK3Q16288 839 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 CEP55Q53EZ4 464 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 TEX2Q8IWB9 1127 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 GLG1Q92896 1179 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 SLC26A6Q9BXS9 759 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 OSBPL7Q9BZF2 842 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 UPF3BQ9BZI7 483 aaKnown RBP18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 GLT8D2Q9H1C3 349 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 JPH1Q9HDC5 661 aaPredicted RBP18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 UNC80Q8N2C7 3258 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 MYO9BQ13459 2157 aa18.78■□□□□ 0.6
NCKIPSD-208ENST00000454134 PRUNE2Q8WUY3 3088 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 CHD7Q9P2D1 2997 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 EPB41L2O43491 1005 aaKnown RBP18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 LGR5O75473 907 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 IGFBP4P22692 258 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 ZNF76P36508 570 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 EVCP57679 992 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 ADAM17P78536 824 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 AKAP17AQ02040 695 aaKnown RBP18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 PPM1EQ8WY54 764 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 UIMC1Q96RL1 719 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 SDF4Q9BRK5 362 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 ZMYND12Q9H0C1 365 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 CERS4Q9HA82 394 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 AGO4Q9HCK5 861 aaKnown RBP18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 ERAP1Q9NZ08 941 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 SLC9A2Q9UBY0 812 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 CYP46A1Q9Y6A2 500 aa18.77■□□□□ 0.6
NCKIPSD-208ENST00000454134 NRCAMQ92823 1304 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 ABHD14A-ACY1A0A1B0GW23 586 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 ESYT2A0FGR8 921 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 MEIS1O00470 390 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 TLL1O43897 1013 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 PPFIA1Q13136 1202 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 ITGB3BPQ13352 177 aaPredicted RBP18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 IKBKEQ14164 716 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 RUFY4Q6ZNE9 571 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 DBF4BQ8NFT6 615 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 PCYT2Q99447 389 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 SMARCAD1Q9H4L7 1026 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 C6orf50Q9HD87 102 aa18.76■□□□□ 0.59
NCKIPSD-208ENST00000454134 EMSYQ7Z589 1322 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 LCHNA4D1U4 455 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 KIF28PB7ZC32 967 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 FAM86B1E9PN63 330 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 DDX39AO00148 427 aaKnown RBP18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 RFXAPO00287 272 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 FAM86B2P0C5J1 330 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 IFNAR1P17181 557 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 ACTR2P61160 394 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 TAP1Q03518 808 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 GRIK4Q16099 956 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 REXO1Q8N1G1 1221 aaKnown RBP18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 RASGRP4Q8TDF6 673 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 CCDC12Q8WUD4 166 aaPredicted RBP18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 ZBTB10Q96DT7 871 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 ZBED2Q9BTP6 218 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 RNF26Q9BY78 433 aaPredicted RBP18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 VPS54Q9P1Q0 977 aa18.75■□□□□ 0.59
NCKIPSD-208ENST00000454134 NFASCO94856 1347 aa18.74■□□□□ 0.59
NCKIPSD-208ENST00000454134 IGBP1P78318 339 aa18.74■□□□□ 0.59
NCKIPSD-208ENST00000454134 CCDC85BQ15834 202 aaPredicted RBP18.74■□□□□ 0.59
NCKIPSD-208ENST00000454134 PLEKHG4Q58EX7 1191 aa18.74■□□□□ 0.59
NCKIPSD-208ENST00000454134 FAM117BQ6P1L5 589 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms