RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RPAINQ86UA6 219 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 TMEM192Q8IY95 271 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 ZNF654Q8IZM8 581 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 GJD3Q8N144 294 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 FIBCD1Q8N539 461 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 BANK1Q8NDB2 785 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 GLG1Q92896 1179 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 GPRASP2Q96D09 838 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 TMEM87BQ96K49 555 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 LRFN3Q9BTN0 628 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 ERAP1Q9NZ08 941 aa15.28■□□□□ 0.04
HMGB3-204ENST00000448905 SPDYE3A6NKU9 549 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 PI4K2BG5E9Z4 385 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 MEIS2O14770 477 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 PRC1O43663 620 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 GPR37L1O60883 481 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 RB1P06400 928 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 SSTR3P32745 418 aaPredicted RBP15.27■□□□□ 0.04
HMGB3-204ENST00000448905 TCF7P36402 384 aaPredicted RBP15.27■□□□□ 0.04
HMGB3-204ENST00000448905 EP400NLQ6ZTU2 488 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 SMARCAD1Q9H4L7 1026 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 EHMT1Q9H9B1 1298 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 RWDD3Q9Y3V2 267 aa15.27■□□□□ 0.04
HMGB3-204ENST00000448905 RRN3P2A6NIE6 340 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 ALADP13716 330 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 ADAM17P78536 824 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 SEMA3FQ13275 785 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 MKRN4PQ13434 485 aaPredicted RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 MTMR1Q13613 665 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 PTCRAQ6ISU1 281 aaPredicted RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 FAM178BQ8IXR5 827 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 MB21D2Q8IYB1 491 aaPredicted RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 LMBR1Q8WVP7 490 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 LY9Q9HBG7 655 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 SUPT16HQ9Y5B9 1047 aaKnown RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 RBM8AQ9Y5S9 174 aaKnown RBP15.26■□□□□ 0.03
HMGB3-204ENST00000448905 SLC12A7Q9Y666 1083 aa15.26■□□□□ 0.03
HMGB3-204ENST00000448905 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.25■□□□□ 0.03
HMGB3-204ENST00000448905 LIFRP42702 1097 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 ANTXR2P58335 489 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 PPFIA1Q13136 1202 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 IER5Q5VY09 327 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 TRIM50Q86XT4 487 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 SRBD1Q8N5C6 995 aaKnown RBP15.25■□□□□ 0.03
HMGB3-204ENST00000448905 KHSRPQ92945 711 aaKnown RBP eCLIP15.25■□□□□ 0.03
HMGB3-204ENST00000448905 C11orf84Q9BUA3 381 aaPredicted RBP15.25■□□□□ 0.03
HMGB3-204ENST00000448905 MYL10Q9BUA6 226 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 NSUN3Q9H649 340 aaKnown RBP15.25■□□□□ 0.03
HMGB3-204ENST00000448905 AZI2Q9H6S1 392 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 TRANK1O15050 2925 aa15.25■□□□□ 0.03
HMGB3-204ENST00000448905 GRXCR2A6NFK2 248 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 ENPP3O14638 875 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 CHRNA1P02708 482 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 BMPR1AP36894 532 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 GRIK4Q16099 956 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 TEX2Q8IWB9 1127 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 FANCBQ8NB91 859 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 PABPC5Q96DU9 382 aaKnown RBP15.24■□□□□ 0.03
HMGB3-204ENST00000448905 TUBE1Q9UJT0 475 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 TAF6LQ9Y6J9 622 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 TANC1Q9C0D5 1861 aa15.24■□□□□ 0.03
HMGB3-204ENST00000448905 M0QZ92 97 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 ATP9AO75110 1047 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 GHRP10912 638 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 ITGB5P18084 799 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 CTNNB1P35222 781 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 CSPP1Q1MSJ5 1256 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 TCEAL5Q5H9L2 206 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 FAM43BQ6ZT52 329 aaPredicted RBP15.23■□□□□ 0.03
HMGB3-204ENST00000448905 CCDC82Q8N4S0 544 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 NEK9Q8TD19 979 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 UPF3BQ9BZI7 483 aaKnown RBP15.23■□□□□ 0.03
HMGB3-204ENST00000448905 LMAN2LQ9H0V9 348 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 JADE2Q9NQC1 790 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 PCDHA6Q9UN73 950 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 PCDHA8Q9Y5H6 950 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 UBIAD1Q9Y5Z9 338 aa15.23■□□□□ 0.03
HMGB3-204ENST00000448905 COL4A4P53420 1690 aaPredicted RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 MYH7BA7E2Y1 1941 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 GSTTP1A0A1W2PQM5 241 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 C5orf67F2Z3F1 127 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 H3BQ06 376 aaPredicted RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 SH2B2O14492 632 aaPredicted RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 PLEKHA8P1O95397 391 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 KCNA2P16389 499 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 MARK3P27448 753 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 BTG3Q14201 252 aaPredicted RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 CMTR1Q8N1G2 835 aaKnown RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 NME8Q8N427 588 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 DNAJB3Q8WWF6 145 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 PPP2R3CQ969Q6 453 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 SDF4Q9BRK5 362 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 FTHL17Q9BXU8 183 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 RNF216Q9NWF9 866 aaPredicted RBP15.22■□□□□ 0.03
HMGB3-204ENST00000448905 PRKAG3Q9UGI9 489 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 SQORQ9Y6N5 450 aa15.22■□□□□ 0.03
HMGB3-204ENST00000448905 MBLAC1A4D2B0 266 aaPredicted RBP15.21■□□□□ 0.03
HMGB3-204ENST00000448905 FOSP01100 380 aaPredicted RBP15.21■□□□□ 0.03
HMGB3-204ENST00000448905 STAG3L1P0CL83 205 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms