RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RCAN1P53805 252 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 IRX6P78412 446 aaPredicted RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 MTMR1Q13613 665 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 TRIM71Q2Q1W2 868 aaKnown RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 TSGA10IPQ3SY00 556 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 PLEKHG4Q58EX7 1191 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 USP17L6PQ6QN14 398 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 DHX32Q7L7V1 743 aaKnown RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 RPAINQ86UA6 219 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 MICALL1Q8N3F8 863 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 SRBD1Q8N5C6 995 aaKnown RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 PPP1R13LQ8WUF5 828 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 NEK1Q96PY6 1258 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 SENP2Q9HC62 589 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 FARP1Q9Y4F1 1045 aaPredicted RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 PRRC2BQ5JSZ5 2229 aaKnown RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 TCF20Q9UGU0 1960 aaKnown RBP8.11□□□□□ -1.11
VPS41-208ENST00000448833 NLRC5Q86WI3 1866 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 LOXHD1Q8IVV2 1947 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 RRN3P2A6NIE6 340 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 TREHO43280 583 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 ZBTB43O43298 467 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 TCF7P36402 384 aaPredicted RBP8.1□□□□□ -1.11
VPS41-208ENST00000448833 SLC26A2P50443 739 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 ERVK-21P61565 698 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 FGD1P98174 961 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 PLCB2Q00722 1185 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 GPNMBQ14956 572 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 PTPROQ16827 1216 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 SLC35G1Q2M3R5 365 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 FAM26DQ5JW98 314 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 PPP1R18Q6NYC8 613 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 TMTC3Q6ZXV5 915 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 HEATR3Q7Z4Q2 680 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 DBF4BQ8NFT6 615 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 ADAMTS19Q8TE59 1207 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 CCDC12Q8WUD4 166 aaPredicted RBP8.1□□□□□ -1.11
VPS41-208ENST00000448833 GLG1Q92896 1179 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 HLA-CQ95604 372 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 SDF4Q9BRK5 362 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 MYL10Q9BUA6 226 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 AZI2Q9H6S1 392 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 JADE2Q9NQC1 790 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 PCDHA6Q9UN73 950 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 PCDHA8Q9Y5H6 950 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 TAF6LQ9Y6J9 622 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 XIRP2A4UGR9 3374 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 NCOR1O75376 2440 aa8.1□□□□□ -1.11
VPS41-208ENST00000448833 M0QZ92 97 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 SORBS3O60504 671 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 CDC45O75419 566 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 PLEKHA8P1O95397 391 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 NAPAP54920 295 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 ADAM17P78536 824 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 DEFB103AP81534 67 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 HTRA4P83105 476 aaPredicted RBP8.09□□□□□ -1.11
VPS41-208ENST00000448833 ARHGAP4P98171 946 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 ZNF200P98182 395 aaPredicted RBP8.09□□□□□ -1.11
VPS41-208ENST00000448833 GRB10Q13322 594 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 RTN1Q16799 776 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 UTP14CQ5TAP6 766 aaKnown RBP8.09□□□□□ -1.11
VPS41-208ENST00000448833 IER5Q5VY09 327 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 TRAF7Q6Q0C0 670 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 APOA5Q6Q788 366 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 MICU3Q86XE3 530 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 MYOCDQ8IZQ8 938 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 CCDC82Q8N4S0 544 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 GPKOWQ92917 476 aaPredicted RBP eCLIP8.09□□□□□ -1.11
VPS41-208ENST00000448833 TOP1MTQ969P6 601 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 UHRF1Q96T88 793 aaPredicted RBP8.09□□□□□ -1.11
VPS41-208ENST00000448833 YME1L1Q96TA2 773 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 IFIH1Q9BYX4 1025 aaKnown RBP8.09□□□□□ -1.11
VPS41-208ENST00000448833 CERS4Q9HA82 394 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 RIC8AQ9NPQ8 531 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 SETD4Q9NVD3 440 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 RWDD3Q9Y3V2 267 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 UBIAD1Q9Y5Z9 338 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 SQORQ9Y6N5 450 aa8.09□□□□□ -1.11
VPS41-208ENST00000448833 NFASCO94856 1347 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 LINC01553A4QN01 128 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 RFXAPO00287 272 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 NCK2O43639 380 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 BMP1P13497 986 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 KCNA2P16389 499 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 ITGB5P18084 799 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 ZNF76P36508 570 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 ADCY7P51828 1080 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 EXOSC10Q01780 885 aaKnown RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 SP4Q02446 784 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 PPFIA1Q13136 1202 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 SEMA3FQ13275 785 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 AP3B2Q13367 1082 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 MBTPS1Q14703 1052 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 PUS10Q3MIT2 529 aaKnown RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 ODR4Q5SWX8 454 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 NIPA1Q7RTP0 329 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 PLPPR4Q7Z2D5 763 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 NME8Q8N427 588 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 FBXO22Q8NEZ5 403 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 LMBR1Q8WVP7 490 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms