RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 LMNAP02545 664 aaKnown RBP8.4□□□□□ -1.07
NEDD9-204ENST00000448183 FGGP02679 453 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 MMEP08473 750 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 AIFM3Q96NN9 605 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 SUDS3Q9H7L9 328 aaPredicted RBP8.4□□□□□ -1.07
NEDD9-204ENST00000448183 SCINQ9Y6U3 715 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 ATP10DQ9P241 1426 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 GNGT2O14610 69 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PPIP5K2O43314 1243 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 RWDD2BP57060 319 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 IL1RL1Q01638 556 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PRKG1Q13976 671 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ABCB5Q2M3G0 1257 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ATG16L1Q676U5 607 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CENPUQ71F23 418 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 NIM1KQ8IY84 436 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 DNAAF3Q8N9W5 541 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 MORC4Q8TE76 937 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ABTB1Q969K4 478 aaPredicted RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 FAM149B1Q96BN6 582 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TSC22D3Q99576 134 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ZNF577Q9BSK1 485 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ORC6Q9Y5N6 252 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ZNF804BA4D1E1 1349 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CHD1O14646 1710 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 SYNJ2BP-COX16A0A087WUM0 186 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 IQANK1A0A1B0GTG1 560 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 WDR91A4D1P6 747 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TADA3O75528 432 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ACSL3O95573 720 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PTPREP23469 700 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 SPARCL1Q14515 664 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TRIP13Q15645 432 aaPredicted RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 GRAMD1BQ3KR37 738 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 RESP18Q5W5W9 173 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TOGARAM2Q6ZUX3 1019 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 SYT2Q8N9I0 419 aaPredicted RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 SLC7A3Q8WY07 619 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CENPKQ9BS16 269 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CALN1Q9BXU9 219 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PUS7LQ9H0K6 701 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 COX16Q9P0S2 106 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 DIS3Q9Y2L1 958 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TTI1O43156 1089 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ATP5HO75947 161 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TTLL1O95922 423 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 SCNN1DP51172 638 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 DYNLT1P63172 113 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ART3Q13508 389 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 FAM160B1Q5W0V3 765 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 DARS2Q6PI48 645 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 KIAA0825Q8IV33 1275 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PIP4K2CQ8TBX8 421 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PI4K2BQ8TCG2 481 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PYROXD1Q8WU10 500 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PARVGQ9HBI0 331 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 KMT5AQ9NQR1 393 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 LGALS16A8MUM7 142 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 MIF4GDA9UHW6 222 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PLA2G4BP0C869 781 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 DEUP1Q05D60 604 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TFDP1Q14186 410 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CDC37Q16543 378 aaPredicted RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 NBPF10Q6P3W6 841 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CCNYQ8ND76 341 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 CCDC124Q96CT7 223 aaKnown RBP8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PIGSQ96S52 555 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 PCIF1Q9H4Z3 704 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 ABHD10Q9NUJ1 306 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 STK32BQ9NY57 414 aa8.39□□□□□ -1.07
NEDD9-204ENST00000448183 TLR3O15455 904 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 XPOTO43592 962 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 S100BP04271 92 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 HSPA8P11142 646 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 ARL4AP40617 200 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 CASP2P42575 452 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 BBS5Q8N3I7 341 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 MAML1Q92585 1016 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 NRBF2Q96F24 287 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 ANKRD36BP1Q96IX9 119 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 BPIFA3Q9BQP9 254 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 TRAIPQ9BWF2 469 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 TRIM55Q9BYV6 548 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 ABCD1P33897 745 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 GGCXP38435 758 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 ATP6V1E2Q96A05 226 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 SAAL1Q96ER3 474 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 PGBD1Q96JS3 809 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 UPF3AQ9H1J1 476 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.38□□□□□ -1.073e-15■■□□□ 11.6
NEDD9-204ENST00000448183 STOML1Q9UBI4 398 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 GDAQ9Y2T3 454 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 PRKAB2O43741 272 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 PLS3P13797 630 aa8.38□□□□□ -1.07
NEDD9-204ENST00000448183 NCF2P19878 526 aaPredicted RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 EEF1B2P24534 225 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 DYNLL1P63167 89 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 MRPS25P82663 173 aaKnown RBP8.38□□□□□ -1.07
NEDD9-204ENST00000448183 PTPN12Q05209 780 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms