RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MTMR1Q13613 665 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 PPP1R18Q6NYC8 613 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 FBXL16Q8N461 479 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 AGXT2Q9BYV1 514 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 PRDM6Q9NQX0 595 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 RFXAPO00287 272 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 ARP10275 920 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 PFKFB3Q16875 520 aaPredicted RBP23.75■■□□□ 1.39
SDC1-205ENST00000447124 PPM1EQ8WY54 764 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 COL25A1Q9BXS0 654 aaPredicted RBP23.75■■□□□ 1.39
SDC1-205ENST00000447124 ANO3Q9BYT9 981 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 CERS4Q9HA82 394 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 KCNH7Q9NS40 1196 aa23.75■■□□□ 1.39
SDC1-205ENST00000447124 ABHD14A-ACY1A0A1B0GW23 586 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 LGR5O75473 907 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 REC8O95072 547 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 FOSP01100 380 aaPredicted RBP23.74■■□□□ 1.39
SDC1-205ENST00000447124 IGFBP4P22692 258 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 KCNJ6P48051 423 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 PKN1Q16512 942 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 DBF4BQ8NFT6 615 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 PCYT2Q99447 389 aa23.74■■□□□ 1.39
SDC1-205ENST00000447124 ZNF215Q9UL58 517 aaPredicted RBP23.74■■□□□ 1.39
SDC1-205ENST00000447124 EPOPA6NHQ4 379 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 KIF28PB7ZC32 967 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 hCG_1984214I3L0E3 225 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 TAP1Q03518 808 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 SPRED2Q7Z698 418 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 TEX2Q8IWB9 1127 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 ZNF713Q8N859 430 aaPredicted RBP23.73■■□□□ 1.39
SDC1-205ENST00000447124 LMBR1Q8WVP7 490 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 EHMT1Q9H9B1 1298 aa23.73■■□□□ 1.39
SDC1-205ENST00000447124 CCDC196A0A1B0GTZ2 297 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 LCHNA4D1U4 455 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 MEIS1O00470 390 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 PRPF3O43395 683 aaKnown RBP23.72■■□□□ 1.39
SDC1-205ENST00000447124 GNAT1P11488 350 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 SCG2P13521 617 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 ARHGAP4P98171 946 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 MKRN4PQ13434 485 aaPredicted RBP23.72■■□□□ 1.39
SDC1-205ENST00000447124 IKBKEQ14164 716 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 CCDC85BQ15834 202 aaPredicted RBP23.72■■□□□ 1.39
SDC1-205ENST00000447124 NTRK3Q16288 839 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 CEP55Q53EZ4 464 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 JAKMIP3Q5VZ66 844 aa23.72■■□□□ 1.39
SDC1-205ENST00000447124 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.72■■□□□ 1.39
SDC1-205ENST00000447124 NRCAMQ92823 1304 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 TLL1O43897 1013 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 PPFIA3O75145 1194 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 MARK3P27448 753 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 PSMA5P28066 241 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 SREBF1P36956 1147 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 EVCP57679 992 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 ITGB3BPQ13352 177 aaPredicted RBP23.71■■□□□ 1.39
SDC1-205ENST00000447124 PLEKHG4Q58EX7 1191 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 PHKBQ93100 1093 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 PTPRSQ13332 1948 aa23.71■■□□□ 1.39
SDC1-205ENST00000447124 NID2Q14112 1375 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 CTSHP09668 335 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 PDIA3P30101 505 aaKnown RBP23.7■■□□□ 1.38
SDC1-205ENST00000447124 AP3B2Q13367 1082 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 FAM26DQ5JW98 314 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 RUFY4Q6ZNE9 571 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 CRYGNQ8WXF5 182 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 ZMYND12Q9H0C1 365 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 GLT8D2Q9H1C3 349 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 SMARCAD1Q9H4L7 1026 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 ZSWIM6Q9HCJ5 1215 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 AGO4Q9HCK5 861 aaKnown RBP23.7■■□□□ 1.38
SDC1-205ENST00000447124 JPH1Q9HDC5 661 aaPredicted RBP23.7■■□□□ 1.38
SDC1-205ENST00000447124 SLC9A2Q9UBY0 812 aa23.7■■□□□ 1.38
SDC1-205ENST00000447124 NFASCO94856 1347 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 EMSYQ7Z589 1322 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 CAND2O75155 1236 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 GJB5O95377 273 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 TOB2Q14106 344 aaPredicted RBP23.69■■□□□ 1.38
SDC1-205ENST00000447124 MARCH8Q5T0T0 291 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 GLG1Q92896 1179 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 ERAP1Q9NZ08 941 aa23.69■■□□□ 1.38
SDC1-205ENST00000447124 PRRC2BQ5JSZ5 2229 aaKnown RBP23.68■■□□□ 1.38
SDC1-205ENST00000447124 KAT6AQ92794 2004 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 EPB41L2O43491 1005 aaKnown RBP23.68■■□□□ 1.38
SDC1-205ENST00000447124 EFCAB14O75071 495 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 CHRNA1P02708 482 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 CCT2P78371 535 aaKnown RBP23.68■■□□□ 1.38
SDC1-205ENST00000447124 PPFIA1Q13136 1202 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 GRIK4Q16099 956 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 RUFY3Q7L099 469 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 ARNTL2Q8WYA1 636 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 ZBTB10Q96DT7 871 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 RAD9AQ99638 391 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 ZBED2Q9BTP6 218 aa23.68■■□□□ 1.38
SDC1-205ENST00000447124 NCOA5Q9HCD5 579 aaKnown RBP23.68■■□□□ 1.38
SDC1-205ENST00000447124 ESYT2A0FGR8 921 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 MBLAC1A4D2B0 266 aaPredicted RBP23.67■■□□□ 1.38
SDC1-205ENST00000447124 FAM86B1E9PN63 330 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 NEFLP07196 543 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 CYP3A4P08684 503 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 FAM86B2P0C5J1 330 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 ACTR2P61160 394 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms