RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FAM153BP0C7A2 387 aa13□□□□□ -0.33
MSH6-204ENST00000445503 SLC9A1P19634 815 aa13□□□□□ -0.33
MSH6-204ENST00000445503 GRAPQ13588 217 aa13□□□□□ -0.33
MSH6-204ENST00000445503 FAM153CQ494X1 144 aa13□□□□□ -0.33
MSH6-204ENST00000445503 TBC1D10BQ4KMP7 808 aaPredicted RBP13□□□□□ -0.33
MSH6-204ENST00000445503 FAM196AQ6ZSG2 479 aa13□□□□□ -0.33
MSH6-204ENST00000445503 ADGRF4Q8IZF3 695 aa13□□□□□ -0.33
MSH6-204ENST00000445503 GIMAP7Q8NHV1 300 aa13□□□□□ -0.33
MSH6-204ENST00000445503 GRAPLQ8TC17 118 aaPredicted RBP13□□□□□ -0.33
MSH6-204ENST00000445503 ZNF622Q969S3 477 aaKnown RBP eCLIP13□□□□□ -0.337e-14■■■□□ 18.5
MSH6-204ENST00000445503 FAM153AQ9UHL3 310 aa13□□□□□ -0.33
MSH6-204ENST00000445503 BCS1LQ9Y276 419 aa13□□□□□ -0.33
MSH6-204ENST00000445503 ATP8A1Q9Y2Q0 1164 aa13□□□□□ -0.33
MSH6-204ENST00000445503 KDM3AQ9Y4C1 1321 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 TTLL1O95922 423 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 SERPINB13Q9UIV8 391 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 NOVA2Q9UNW9 492 aaKnown RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 EIF3HO15372 352 aaKnown RBP eCLIP12.99□□□□□ -0.336e-7■■□□□ 13.3
MSH6-204ENST00000445503 STAT1P42224 750 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 PSMD2Q13200 908 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 ZYXQ15942 572 aaKnown RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 ICE2Q659A1 982 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 SPICE1Q8N0Z3 855 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 PNMA5Q96PV4 448 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 TLR10Q9BXR5 811 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 BLOC1S4Q9NUP1 217 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 PNMA6FA0A0J9YX94 578 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 A0A1W2PQJ5 194 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 LRRN2O75325 713 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 CFBP00751 764 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 AFPP02771 609 aaKnown RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 HOXA13P31271 388 aaPredicted RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 GPSM2P81274 684 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 PACS2Q86VP3 889 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 SFR1Q86XK3 245 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 AMFRQ9UKV5 643 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 KIF1AQ12756 1690 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 PDHBP11177 359 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 IRX3P78415 501 aaPredicted RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 RUFY4Q6ZNE9 571 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 RNF10Q8N5U6 811 aaKnown RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 RBM17Q96I25 401 aaKnown RBP12.99□□□□□ -0.33
MSH6-204ENST00000445503 BHMT2Q9H2M3 363 aa12.99□□□□□ -0.33
MSH6-204ENST00000445503 SPEF2Q9C093 1822 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 FLT1P17948 1338 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 RAD51CO43502 376 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 DHX9Q08211 1270 aaKnown RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 KIAA0825Q8IV33 1275 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 LRRC15Q8TF66 581 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 RNPC3Q96LT9 517 aaKnown RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 GCNT4Q9P109 453 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 CTTNBP2NLQ9P2B4 639 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 AMACRQ9UHK6 382 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 MYH2Q9UKX2 1941 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 PGRMC1O00264 195 aaKnown RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 VIMP08670 466 aaKnown RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 KLHDC7AQ5VTJ3 777 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 SLFN13Q68D06 897 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 DAGLBQ8NCG7 672 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 PIGOQ8TEQ8 1089 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 EFCC1Q9HA90 598 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 CTDP1Q9Y5B0 961 aaPredicted RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 NID2Q14112 1375 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 SLURP2P0DP57 97 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 AARSP49588 968 aaKnown RBP eCLIP12.98□□□□□ -0.338e-6■■■■■ 52.4
MSH6-204ENST00000445503 MMTAG2Q9BU76 263 aaKnown RBP12.98□□□□□ -0.33
MSH6-204ENST00000445503 MXD3Q9BW11 206 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 SALL4Q9UJQ4 1053 aa12.98□□□□□ -0.33
MSH6-204ENST00000445503 EXOC3O60645 756 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 MAP2K1Q02750 393 aaPredicted RBP12.97□□□□□ -0.33
MSH6-204ENST00000445503 SLC18A3Q16572 532 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 RNF14Q9UBS8 474 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 SIK3Q9Y2K2 1263 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 DAPK3O43293 454 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 ATP2B4P23634 1241 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 ZNF211Q13398 564 aaPredicted RBP12.97□□□□□ -0.33
MSH6-204ENST00000445503 TRADDQ15628 312 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 GJB7Q6PEY0 223 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 AENQ8WTP8 325 aaKnown RBP12.97□□□□□ -0.33
MSH6-204ENST00000445503 FRMD4BQ9Y2L6 1034 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 GDF11O95390 407 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 FECHP22830 423 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 SLC35G1Q2M3R5 365 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 PTF1AQ7RTS3 328 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 PROM2Q8N271 834 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 TBC1D22AQ8WUA7 517 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 CASKIN2Q8WXE0 1202 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 ANO3Q9BYT9 981 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 MTMR4Q9NYA4 1195 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 NWD2Q9ULI1 1742 aa12.97□□□□□ -0.33
MSH6-204ENST00000445503 SSU72P8A0A1W2PR75 194 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 A6NNZ2 444 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 FGRP09769 529 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 PLTPP55058 493 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 PTK2Q05397 1052 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 CETN1Q12798 172 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 TUBB8Q3ZCM7 444 aa12.96□□□□□ -0.33
MSH6-204ENST00000445503 GLE1Q53GS7 698 aaKnown RBP12.96□□□□□ -0.33
MSH6-204ENST00000445503 FIGNQ5HY92 759 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms