RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SEMA3FQ13275 785 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 ADAM15Q13444 863 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 SMAD4Q13485 552 aaKnown RBP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 SEC23AQ15436 765 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 DIEXFQ68CQ4 756 aaKnown RBP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 METTL7BQ6UX53 244 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 INPP4AQ96PE3 977 aaPredicted RBP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 BAZ2BQ9UIF8 2168 aaKnown RBP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 ADGRA3Q8IWK6 1321 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 TRIM6-TRIM34B2RNG4 842 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 ENPP3O14638 875 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 EYA4O95677 639 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 MMP1P03956 469 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 CLUL1Q15846 466 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 CRIPAKQ8N1N5 446 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 PRSS33Q8NF86 280 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 LMBR1Q8WVP7 490 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 MSLNLQ96KJ4 702 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 PHOX2BQ99453 314 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
HMGN1-208ENST00000443046 TELO2Q9Y4R8 837 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 CACNA1HO95180 2353 aa16.7■□□□□ 0.26
HMGN1-208ENST00000443046 GCOM1H8Y6P7 765 aaPredicted RBP16.69■□□□□ 0.26
HMGN1-208ENST00000443046 NOP56O00567 594 aaKnown RBP16.69■□□□□ 0.26
HMGN1-208ENST00000443046 STAM2O75886 525 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 POLR2MP0CAP2 368 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 MGAT3Q09327 533 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 HDAC1Q13547 482 aaPredicted RBP16.69■□□□□ 0.26
HMGN1-208ENST00000443046 NEDD9Q14511 834 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 CYFIP1Q7L576 1253 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 SNX27Q96L92 541 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 PLVAPQ9BX97 442 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 KRT23Q9C075 422 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 RIOX1Q9H6W3 641 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 CD207Q9UJ71 328 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 NRCAMQ92823 1304 aa16.69■□□□□ 0.26
HMGN1-208ENST00000443046 ZFHX2Q9C0A1 2572 aaPredicted RBP16.68■□□□□ 0.26
HMGN1-208ENST00000443046 STXBP3O00186 592 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 LINC01565O15544 149 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 LPIN1Q14693 890 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 CBX2Q14781 532 aaPredicted RBP16.68■□□□□ 0.26
HMGN1-208ENST00000443046 GNPTABQ3T906 1256 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 IFIT1BQ5T764 474 aaKnown RBP16.68■□□□□ 0.26
HMGN1-208ENST00000443046 IER5LQ5T953 404 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 FCHSD1Q86WN1 690 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 TRIM50Q86XT4 487 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 P2RX5Q93086 422 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 RILPL2Q969X0 211 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 DSCC1Q9BVC3 393 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 PLAGL2Q9UPG8 496 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 SUPT16HQ9Y5B9 1047 aaKnown RBP16.68■□□□□ 0.26
HMGN1-208ENST00000443046 WDR87Q6ZQQ6 2873 aa16.68■□□□□ 0.26
HMGN1-208ENST00000443046 LOC730098B7Z3J9 87 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 DGKIO75912 1065 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 GHRP10912 638 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 DNAJB1P25685 340 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 ARHGAP4P98171 946 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 TRAF1Q13077 416 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 PKN1Q16512 942 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 RUFY4Q6ZNE9 571 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 TRIM67Q6ZTA4 783 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 PIGSQ96S52 555 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 SENP7Q9BQF6 1050 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 UBAC1Q9BSL1 405 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 CNNM2Q9H8M5 875 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 ALG13Q9NP73 1137 aaKnown RBP16.67■□□□□ 0.26
HMGN1-208ENST00000443046 CLEC1BQ9P126 229 aa16.67■□□□□ 0.26
HMGN1-208ENST00000443046 ZNF215Q9UL58 517 aaPredicted RBP16.67■□□□□ 0.26
HMGN1-208ENST00000443046 KIAA1671Q9BY89 1806 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 TMEM221A6NGB7 291 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 M0R296 226 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 FIBPO43427 364 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 CYTH3O43739 400 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 COASYQ13057 564 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 BTG3Q14201 252 aaPredicted RBP16.66■□□□□ 0.26
HMGN1-208ENST00000443046 IMMTQ16891 758 aaKnown RBP16.66■□□□□ 0.26
HMGN1-208ENST00000443046 NAALADL2Q58DX5 795 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 TAF2Q6P1X5 1199 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 CWC27Q6UX04 472 aaKnown RBP16.66■□□□□ 0.26
HMGN1-208ENST00000443046 SMRP1Q8NCR6 262 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 SPPL3Q8TCT6 385 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 OSBPL3Q9H4L5 887 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 IGFLR1Q9H665 355 aa16.66■□□□□ 0.26
HMGN1-208ENST00000443046 KMT2EQ8IZD2 1858 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 PNMA6FA0A0J9YX94 578 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 MBLAC1A4D2B0 266 aaPredicted RBP16.65■□□□□ 0.26
HMGN1-208ENST00000443046 PTPN5P54829 565 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 TCF15Q12870 199 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 GRM4Q14833 912 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 FBXO47Q5MNV8 452 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 CYB5R4Q7L1T6 521 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 EFHBQ8N7U6 833 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 LINC01599Q8WXQ3 324 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 PRRX2Q99811 253 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 RTEL1Q9NZ71 1219 aa16.65■□□□□ 0.26
HMGN1-208ENST00000443046 ITGB1P05556 798 aa16.64■□□□□ 0.25
HMGN1-208ENST00000443046 RRP1P56182 461 aaKnown RBP16.64■□□□□ 0.25
HMGN1-208ENST00000443046 ZXDAP98168 799 aa16.64■□□□□ 0.25
HMGN1-208ENST00000443046 MARCH8Q5T0T0 291 aa16.64■□□□□ 0.25
HMGN1-208ENST00000443046 UTP14CQ5TAP6 766 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms