RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 VSTM4Q8IW00 320 aa23.52■■□□□ 1.36
PTPRF-207ENST00000436724 PROCA1Q8NCQ7 364 aaPredicted RBP23.52■■□□□ 1.36
PTPRF-207ENST00000436724 DHTKD1Q96HY7 919 aaPredicted RBP23.52■■□□□ 1.36
PTPRF-207ENST00000436724 RIT2Q99578 217 aa23.52■■□□□ 1.36
PTPRF-207ENST00000436724 PDCL3Q9H2J4 239 aa23.52■■□□□ 1.36
PTPRF-207ENST00000436724 TBC1D7Q9P0N9 293 aa23.52■■□□□ 1.36
PTPRF-207ENST00000436724 STK24Q9Y6E0 443 aa23.52■■□□□ 1.36
PTPRF-207ENST00000436724 TESPA1A2RU30 521 aaPredicted RBP23.51■■□□□ 1.35
PTPRF-207ENST00000436724 HOXA7P31268 230 aaPredicted RBP23.51■■□□□ 1.35
PTPRF-207ENST00000436724 ANKRD40Q6AI12 368 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 NIPA1Q7RTP0 329 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 ARMC9Q7Z3E5 817 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 IRF2BP1Q8IU81 584 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 SYT2Q8N9I0 419 aaPredicted RBP23.51■■□□□ 1.35
PTPRF-207ENST00000436724 TRIM47Q96LD4 638 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 IMPACTQ9P2X3 320 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 A0A1B0GTH6 734 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 CXCL11O14625 94 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 TEX33O43247 280 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 NR1I3Q14994 352 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 P2RX5Q93086 422 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 DUSP9Q99956 384 aaKnown RBP23.51■■□□□ 1.35
PTPRF-207ENST00000436724 FGFBP2Q9BYJ0 223 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 POLD4Q9HCU8 107 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 KCNH4Q9UQ05 1017 aa23.51■■□□□ 1.35
PTPRF-207ENST00000436724 ATP9AO75110 1047 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 KRT18P05783 430 aaKnown RBP23.5■■□□□ 1.35
PTPRF-207ENST00000436724 NR3C2P08235 984 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 CCNE1P24864 410 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 IRX3P78415 501 aaPredicted RBP23.5■■□□□ 1.35
PTPRF-207ENST00000436724 PPIL2Q13356 520 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 KRT31Q15323 416 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 SRRTQ9BXP5 876 aaKnown RBP23.5■■□□□ 1.35
PTPRF-207ENST00000436724 ASCC2Q9H1I8 757 aaPredicted RBP23.5■■□□□ 1.35
PTPRF-207ENST00000436724 SEMA6BQ9H3T3 888 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 TUFT1Q9NNX1 390 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 GJA5P36382 358 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 ARMCX5Q6P1M9 558 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 VSIG10LQ86VR7 867 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 BANK1Q8NDB2 785 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 PAGR1Q9BTK6 254 aa23.5■■□□□ 1.35
PTPRF-207ENST00000436724 ADD3Q9UEY8 706 aaKnown RBP23.5■■□□□ 1.35
PTPRF-207ENST00000436724 KCNJ18B7U540 433 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 MOGSQ13724 837 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 KCNJ12Q14500 433 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 TCP11X2Q5H9J9 407 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 RUSC1Q9BVN2 902 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 ZHX3Q9H4I2 956 aa23.49■■□□□ 1.35
PTPRF-207ENST00000436724 GIT2Q14161 759 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 EPHA7Q15375 998 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 COBLL1Q53SF7 1204 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 LDLRAD1Q5T700 205 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 NSUN6Q8TEA1 469 aaKnown RBP23.48■■□□□ 1.35
PTPRF-207ENST00000436724 REEP2Q9BRK0 252 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 R3HDMLQ9H3Y0 253 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 EYA4O95677 639 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 GOLGA8FQ08AF8 430 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 GOLGA8DPQ0D2H9 430 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 HERC4Q5GLZ8 1057 aaPredicted RBP23.48■■□□□ 1.35
PTPRF-207ENST00000436724 FAM26FQ5R3K3 315 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 CCDC65Q8IXS2 484 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 CSGALNACT2Q8N6G5 542 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 LXNQ9BS40 222 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 VPS16Q9H269 839 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 BCAS3Q9H6U6 928 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 TAB2Q9NYJ8 693 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 AGTPBP1Q9UPW5 1226 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 A0A0G2JMZ2 1700 aa23.48■■□□□ 1.35
PTPRF-207ENST00000436724 CCND2P30279 289 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 GSDMDP57764 484 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 HERVK_113P62684 666 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 PSMD2Q13200 908 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 MIER3Q7Z3K6 550 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 GTPBP4Q9BZE4 634 aaKnown RBP23.47■■□□□ 1.35
PTPRF-207ENST00000436724 LIMA1Q9UHB6 759 aaKnown RBP23.47■■□□□ 1.35
PTPRF-207ENST00000436724 LCTP09848 1927 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 RGS20O76081 388 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 CNTN2Q02246 1040 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 CENPPQ6IPU0 288 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 ANKRD35Q8N283 1001 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 GUF1Q8N442 669 aaKnown RBP23.47■■□□□ 1.35
PTPRF-207ENST00000436724 SPATC1LQ9H0A9 340 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 SAMM50Q9Y512 469 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 PCDHA2Q9Y5H9 948 aa23.47■■□□□ 1.35
PTPRF-207ENST00000436724 BICDL2A1A5D9 508 aa23.46■■□□□ 1.35
PTPRF-207ENST00000436724 RSPH10B2B2RC85 870 aa23.46■■□□□ 1.35
PTPRF-207ENST00000436724 RSPH10BP0C881 870 aa23.46■■□□□ 1.35
PTPRF-207ENST00000436724 CTAGE1Q96RT6 745 aa23.46■■□□□ 1.35
PTPRF-207ENST00000436724 RRAGCQ9HB90 399 aa23.46■■□□□ 1.35
PTPRF-207ENST00000436724 ASTN1O14525 1302 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 FRMD3A2A2Y4 597 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 LRRC10BA6NIK2 292 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 GTF2F1P35269 517 aaKnown RBP eCLIP23.45■■□□□ 1.35
PTPRF-207ENST00000436724 PPP1R2P41236 205 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 CCZ1BP86790 482 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 CCZ1P86791 482 aaPredicted RBP23.45■■□□□ 1.35
PTPRF-207ENST00000436724 RINT1Q6NUQ1 792 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 NCAPG2Q86XI2 1143 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 RIOX2Q8IUF8 465 aa23.45■■□□□ 1.35
PTPRF-207ENST00000436724 MB21D1Q8N884 522 aa23.45■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms