RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 DEPDC1BQ8WUY9 529 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 GPR101Q96P66 508 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 FIS1Q9Y3D6 152 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PTCH1Q13635 1447 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 CACNB1Q02641 598 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 BBOF1Q8ND07 529 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 HSPH1Q92598 858 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PUS3Q9BZE2 481 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 WDR11Q9BZH6 1224 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 FANCLQ9NW38 375 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PPP4R4Q6NUP7 873 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 SEPT12Q8IYM1 358 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 DYNLL2Q96FJ2 89 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 ZBTB1Q9Y2K1 713 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 MAP3K7O43318 606 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 HP1BP3Q5SSJ5 553 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 USP17L2Q6R6M4 530 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 FRA10AC1Q70Z53 315 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 CDC26Q8NHZ8 85 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 URGCPQ8TCY9 931 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 AFG1LQ8WV93 481 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PNMA6FA0A0J9YX94 578 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 LRRC8CQ8TDW0 803 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 GBP5Q96PP8 586 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PIGSQ96S52 555 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PPP2R2CQ9Y2T4 447 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 SRP68Q9UHB9 627 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 CDO1Q16878 200 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PPWD1Q96BP3 646 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 CYP2D7A0A087X1C5 515 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 SART1O43290 800 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 PPFIA2O75334 1257 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 LCORLQ8N3X6 602 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 SSH3Q8TE77 659 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 TM6SF1Q9BZW5 370 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 ALKQ9UM73 1620 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 A0A1B0GUA9 196 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 EVI5O60447 810 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 GFPT2O94808 682 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 FAM186BQ8IYM0 893 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 COA7Q96BR5 231 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 Q9H521 79 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 MGEA5O60502 916 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 GUCY2DQ02846 1103 aa13.02□□□□□ -0.32
CCDC88A-207ENST00000436346 METP08581 1390 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 CMA1P23946 247 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 PDIA3P30101 505 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 PHEXP78562 749 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 TTC25Q96NG3 672 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 MYO3AQ8NEV4 1616 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 TWF2Q6IBS0 349 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 FAM81BQ96LP2 452 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 SLC13A4Q9UKG4 626 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 PLCG1P19174 1290 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 EEF1GP26641 437 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 GNL1P36915 607 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 ASPHQ12797 758 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 THOC5Q13769 683 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 UBE3CQ15386 1083 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 RNF207Q6ZRF8 634 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF589Q86UQ0 364 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 ALKBH8Q96BT7 664 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 IFT122Q9HBG6 1241 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 ZSWIM6Q9HCJ5 1215 aa13.02□□□□□ -0.33
CCDC88A-207ENST00000436346 HMGB1P1B2RPK0 211 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 GCFC2P16383 781 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 FBXW4P57775 412 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 CIAPIN1Q6FI81 312 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 UNC5CLQ8IV45 518 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 USP28Q96RU2 1077 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TLR7Q9NYK1 1049 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TRAPPC10P48553 1259 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 GIMAP8Q8ND71 665 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TACO1Q9BSH4 297 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 FSD1LQ9BXM9 530 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 DBNLQ9UJU6 430 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 EIF2AK2P19525 551 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 FAM133AQ8N9E0 248 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 FGD4Q96M96 766 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TMEM206Q9H813 350 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 NFKBIAP25963 317 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 EPHB1P54762 984 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 BASP1P80723 227 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 LLGL1Q15334 1064 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 RNF26Q9BY78 433 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 STK17AQ9UEE5 414 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 BAZ2AQ9UIF9 1905 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 hCG_1984214I3L0E3 225 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 GNAT1P11488 350 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 FASTKD5Q7L8L6 764 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF713Q8N859 430 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 MMTAG2Q9BU76 263 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 ATP6V0A4Q9HBG4 840 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 COPB1P53618 953 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 SPOPLQ6IQ16 392 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 PRPF38AQ8NAV1 312 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 HPCAL4Q9UM19 191 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 INPP5FQ9Y2H2 1132 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms