RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SCYL3Q8IZE3 742 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 FBXO18Q8NFZ0 1043 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 SSH2Q76I76 1423 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 SFI1A8K8P3 1242 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 NR5A1Q13285 461 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 PCGF5Q86SE9 256 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 EFCAB13Q8IY85 973 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 RNF26Q9BY78 433 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 CUEDC2Q9H467 287 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 IL6STP40189 918 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 DHTKD1Q96HY7 919 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 CDHR1Q96JP9 859 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 SUCLA2Q9P2R7 463 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 YWHAHQ04917 246 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-206ENST00000429895 PPP1R13BQ96KQ4 1090 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 LTKP29376 864 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 ADD2P35612 726 aa16.63■□□□□ 0.25
PTPRF-206ENST00000429895 BBOX1O75936 387 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 ZNF658Q5TYW1 1059 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 CIAPIN1Q6FI81 312 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 AK8Q96MA6 479 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PLA2G4BP0C869 781 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 NSUN2Q08J23 767 aaKnown RBP eCLIP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 GPT2Q8TD30 523 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PI4KBQ9UBF8 816 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PPP1R9AQ9ULJ8 1098 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 FRMD3A2A2Y4 597 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PPP6R2O75170 966 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 MAN2A1Q16706 1144 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 ZNF772Q68DY9 489 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 TRIM67Q6ZTA4 783 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 SZRD1Q7Z422 152 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PUS7LQ9H0K6 701 aaKnown RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 PARVGQ9HBI0 331 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 EMILIN3Q9NT22 766 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 MAN1B1Q9UKM7 699 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 SEC31AO94979 1220 aaKnown RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 C10orf76Q5T2E6 689 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 DNAJC17Q9NVM6 304 aaKnown RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 WDR62O43379 1518 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 SUN1O94901 812 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 MT-ND3P03897 115 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 NCF2P19878 526 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 GSDMAQ96QA5 445 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 MRPL47Q9HD33 250 aaKnown RBP16.62■□□□□ 0.25
PTPRF-206ENST00000429895 NRBP1Q9UHY1 535 aa16.62■□□□□ 0.25
PTPRF-206ENST00000429895 GOLGA8QA0A0J9YX86 632 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 GOLGA8OA6NCC3 632 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 GOLGA8NF8WBI6 632 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 CACNB3P54284 484 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 SLC39A14Q15043 492 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ARMCX2Q7L311 632 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 MECOMQ03112 1051 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 APOEP02649 317 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ANKRD20A4Q4UJ75 823 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ANKRD20A8PQ5CZ79 823 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ANKRD20A2Q5SQ80 823 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ANKRD20A1Q5TYW2 823 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 MMTAG2Q9BU76 263 aaKnown RBP16.61■□□□□ 0.25
PTPRF-206ENST00000429895 SPZ1Q9BXG8 430 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 EPS15L1Q9UBC2 864 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ITM2BQ9Y287 266 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 CFLARO15519 480 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 C21orf2O43822 256 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 GNL1P36915 607 aaPredicted RBP16.61■□□□□ 0.25
PTPRF-206ENST00000429895 UNC5CLQ8IV45 518 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 THNSL1Q8IYQ7 743 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 CYP21A2P08686 494 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 GCFC2P16383 781 aaKnown RBP16.61■□□□□ 0.25
PTPRF-206ENST00000429895 MXI1P50539 228 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ETF1P62495 437 aaKnown RBP16.61■□□□□ 0.25
PTPRF-206ENST00000429895 NOP14P78316 857 aaKnown RBP16.61■□□□□ 0.25
PTPRF-206ENST00000429895 CATSPER4Q7RTX7 472 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 ANLNQ9NQW6 1124 aa16.61■□□□□ 0.25
PTPRF-206ENST00000429895 TRAPPC10P48553 1259 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 ACRBPQ8NEB7 543 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 FAF1Q9UNN5 650 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-206ENST00000429895 MYOM2P54296 1465 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 PLS3P13797 630 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 PLCG1P19174 1290 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 CCT5P48643 541 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 ZNF394Q53GI3 561 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 TTC25Q96NG3 672 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 DHX36Q9H2U1 1008 aaKnown RBP16.6■□□□□ 0.25
PTPRF-206ENST00000429895 SLC13A4Q9UKG4 626 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 TMEM2Q9UHN6 1383 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 PEX3P56589 373 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 DPCR1Q3MIW9 517 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 BBS9Q3SYG4 887 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 RASEFQ8IZ41 740 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 COPRSQ9NQ92 184 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 ARL13BQ3SXY8 428 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 RNF219Q5W0B1 726 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-206ENST00000429895 RNF207Q6ZRF8 634 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 LCA5Q86VQ0 697 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 PDCD6IPQ8WUM4 868 aaKnown RBP16.6■□□□□ 0.25
PTPRF-206ENST00000429895 SPTLC3Q9NUV7 552 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 BIVM-ERCC5R4GMW8 1640 aa16.6■□□□□ 0.25
PTPRF-206ENST00000429895 ARHGEF37A1IGU5 675 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms