RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 KCTD1Q719H9 257 aa9.99□□□□□ -0.81
HDAC1-202ENST00000428704 DHX32Q7L7V1 743 aaKnown RBP9.99□□□□□ -0.81
HDAC1-202ENST00000428704 BANK1Q8NDB2 785 aa9.99□□□□□ -0.81
HDAC1-202ENST00000428704 RAVER2Q9HCJ3 691 aaKnown RBP9.99□□□□□ -0.81
HDAC1-202ENST00000428704 ALG13Q9NP73 1137 aaKnown RBP9.99□□□□□ -0.81
HDAC1-202ENST00000428704 TAF6LQ9Y6J9 622 aa9.99□□□□□ -0.81
HDAC1-202ENST00000428704 DDX49Q9Y6V7 483 aaKnown RBP9.99□□□□□ -0.81
HDAC1-202ENST00000428704 TECTAO75443 2155 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 MYH6P13533 1939 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 B4E1Z4 1266 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 STXBP3O00186 592 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 PLA2G6O60733 806 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 RGS20O76081 388 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 LARGE1O95461 756 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 SNHG28P0DPA3 235 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 TOP1P11387 765 aaKnown RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 AVPR2P30518 371 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 OAZ1P54368 228 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 DEFB103AP81534 67 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 SMAD2Q15796 467 aaKnown RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 CLUL1Q15846 466 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 FAM47CQ5HY64 1035 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 TTBK2Q6IQ55 1244 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 FAM160B2Q86V87 743 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 CCDC144CPQ8IYA2 1237 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 CPXCR1Q8N123 301 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 ANKRD35Q8N283 1001 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 KRI1Q8N9T8 703 aaKnown RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 DCAF4Q8WV16 495 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 FGD4Q96M96 766 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 ZKSCAN3Q9BRR0 538 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 LLPHQ9BRT6 129 aaKnown RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 C17orf80Q9BSJ5 609 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 RNF41Q9H4P4 317 aaPredicted RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 PRR12Q9ULL5 1215 aa9.98□□□□□ -0.81
HDAC1-202ENST00000428704 GNEQ9Y223 722 aaKnown RBP9.98□□□□□ -0.81
HDAC1-202ENST00000428704 ZBED4O75132 1171 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 PRPF40AO75400 957 aaKnown RBP9.97□□□□□ -0.81
HDAC1-202ENST00000428704 GJB5O95377 273 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 PDHBP11177 359 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 PTGS1P23219 599 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 GJB2P29033 226 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 SNAP25P60880 206 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 ZXDAP98168 799 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 BFSP2Q13515 415 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 IMMTQ16891 758 aaKnown RBP9.97□□□□□ -0.81
HDAC1-202ENST00000428704 NBPF20Q3BBV1 942 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 FAM117BQ6P1L5 589 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 BTNL9Q6UXG8 535 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 DGLUCYQ7Z3D6 616 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 RPAINQ86UA6 219 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 CCDC83Q8IWF9 413 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 RGS22Q8NE09 1264 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 ESR2Q92731 530 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 CNTNAP3BQ96NU0 1288 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 CNTNAP3Q9BZ76 1288 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 KATNBL1Q9H079 304 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 NSUN3Q9H649 340 aaKnown RBP9.97□□□□□ -0.81
HDAC1-202ENST00000428704 MTMR7Q9Y216 660 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 NOD1Q9Y239 953 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 FRMPD2Q68DX3 1309 aaPredicted RBP9.97□□□□□ -0.81
HDAC1-202ENST00000428704 WDR19Q8NEZ3 1342 aa9.97□□□□□ -0.81
HDAC1-202ENST00000428704 RIF1Q5UIP0 2472 aaKnown RBP9.97□□□□□ -0.81
HDAC1-202ENST00000428704 COL4A6Q14031 1691 aa9.96□□□□□ -0.81
HDAC1-202ENST00000428704 E7EWF7 191 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 MBTPS2O43462 519 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 F13A1P00488 732 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 FDX1P10109 184 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 XRCC6P12956 609 aaKnown RBP eCLIP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 SLC16A2P36021 539 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 NT5C2P49902 561 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 ZNF543Q08ER8 600 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 CCDC96Q2M329 555 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 STOX1Q6ZVD7 989 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 CYB5R4Q7L1T6 521 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 METTL3Q86U44 580 aaKnown RBP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 ADSSL1Q8N142 457 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 ENAHQ8N8S7 591 aaPredicted RBP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 CHURC1Q8WUH1 139 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 ZNF274Q96GC6 653 aaPredicted RBP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 RANBP17Q9H2T7 1088 aaKnown RBP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 ZSWIM5Q9P217 1185 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 MTMR6Q9Y217 621 aa9.96□□□□□ -0.82
HDAC1-202ENST00000428704 CTDP1Q9Y5B0 961 aaPredicted RBP9.96□□□□□ -0.82
HDAC1-202ENST00000428704 GOLGA8CPA6NN73 597 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 NCK2O43639 380 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 PFKFB2O60825 505 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 SMPD1P17405 629 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 NBL1P41271 181 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 SIGLEC14Q08ET2 396 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 IKQ13123 557 aaPredicted RBP9.95□□□□□ -0.82
HDAC1-202ENST00000428704 SMAD4Q13485 552 aaKnown RBP9.95□□□□□ -0.82
HDAC1-202ENST00000428704 COL19A1Q14993 1142 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 SEC23AQ15436 765 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 MUM1L1Q5H9M0 696 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 SYDE2Q5VT97 1194 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 CNKSR3Q6P9H4 555 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 Q6ZUG5 572 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 DGKHQ86XP1 1220 aa9.95□□□□□ -0.82
HDAC1-202ENST00000428704 CHST13Q8NET6 341 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms