RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 DOCK5Q9H7D0 1870 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 WNT7AO00755 349 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 PSMD10O75832 226 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 INHAP05111 366 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 KCNA2P16389 499 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 CMA1P23946 247 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 MCM4P33991 863 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 EPHA7Q15375 998 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 SKOR2Q2VWA4 1001 aaPredicted RBP11.33□□□□□ -0.59
CD44-207ENST00000425428 PRAMEF19Q5SWL8 479 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 CABP7Q86V35 215 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 CKAP2LQ8IYA6 745 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 CEP57L1Q8IYX8 460 aa11.33□□□□□ -0.59
CD44-207ENST00000425428 SYAP1Q96A49 352 aaPredicted RBP11.33□□□□□ -0.59
CD44-207ENST00000425428 ZNF215Q9UL58 517 aaPredicted RBP11.33□□□□□ -0.59
CD44-207ENST00000425428 KAT6AQ92794 2004 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 DYNC1LI2O43237 492 aaPredicted RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 KPNA6O60684 536 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 DUSP11O75319 330 aaKnown RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 RGS20O76081 388 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 P4HBP07237 508 aaKnown RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 ZNF865P0CJ78 1059 aaPredicted RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 CYBAP13498 195 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 MUTP22033 750 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 CACNB2Q08289 660 aaPredicted RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 DGKDQ16760 1214 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 RRAGBQ5VZM2 374 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 OTUD6AQ7L8S5 288 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 TLK2Q86UE8 772 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 IGSF22Q8N9C0 903 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 FSIP1Q8NA03 581 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 IQUBQ8NA54 791 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 GLG1Q92896 1179 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 CLIC6Q96NY7 704 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 LRRC27Q9C0I9 530 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 UNC45AQ9H3U1 944 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 TUFT1Q9NNX1 390 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 PRDM10Q9NQV6 1147 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 PDGFCQ9NRA1 345 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 USP25Q9UHP3 1055 aa11.33□□□□□ -0.6
CD44-207ENST00000425428 DDX49Q9Y6V7 483 aaKnown RBP11.33□□□□□ -0.6
CD44-207ENST00000425428 POTEMA6NI47 508 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 KINO60870 393 aaKnown RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 ATP9AO75110 1047 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 FARP2O94887 1054 aaPredicted RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 MYCNP04198 464 aaPredicted RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 SYKP43405 635 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 ACTR2P61160 394 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 ITGB3BPQ13352 177 aaPredicted RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 KANK3Q6NY19 840 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 CCDC62Q6P9F0 684 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 RNF180Q86T96 592 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 TPH2Q8IWU9 490 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 PPTC7Q8NI37 304 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 EMID1Q96A84 441 aaPredicted RBP11.32□□□□□ -0.6
CD44-207ENST00000425428 ZSWIM4Q9H7M6 989 aa11.32□□□□□ -0.6
CD44-207ENST00000425428 EDIL3O43854 480 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 SORBS3O60504 671 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 PPFIA4O75335 1185 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 C6orf222P0C671 652 aaPredicted RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 SMPD1P17405 629 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 STAT6P42226 847 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 QARSP47897 775 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 SLC26A2P50443 739 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 PSMC5P62195 406 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 AMPD3Q01432 767 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 SEMA3FQ13275 785 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 RESP18Q5W5W9 173 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 PCSK9Q8NBP7 692 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 ARRDC4Q8NCT1 418 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 GJA10Q969M2 543 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 FAM167AQ96KS9 214 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 EIF2AK1Q9BQI3 630 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 POLR3CQ9BUI4 534 aaPredicted RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 CCSER1Q9C0I3 900 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 KATNBL1Q9H079 304 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 CUEDC2Q9H467 287 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 SMARCAD1Q9H4L7 1026 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 ZNF302Q9NR11 478 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 NRBP2Q9NSY0 501 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 BMP2KQ9NSY1 1161 aaPredicted RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 DDX20Q9UHI6 824 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 VAV3Q9UKW4 847 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 KCNH3Q9ULD8 1083 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 DNM3Q9UQ16 869 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 DHX15O43143 795 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 SUPT20HL2P0C7V6 817 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 CAPN2P17655 700 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 RPA1P27694 616 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 TCF7P36402 384 aaPredicted RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 SP2Q02086 613 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 UTP14CQ5TAP6 766 aaKnown RBP11.31□□□□□ -0.6
CD44-207ENST00000425428 PDXDC2PQ6P474 469 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 CHAMP1Q96JM3 812 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 NACC1Q96RE7 527 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 KATNAL1Q9BW62 490 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 XPNPEP3Q9NQH7 507 aa11.31□□□□□ -0.6
CD44-207ENST00000425428 WDR81Q562E7 1941 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 A0A1B0GVL5 298 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms