RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TRPC5Q9UL62 973 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 USP19O94966 1318 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 RGPD8O14715 1765 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 COL22A1Q8NFW1 1626 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 ITSN1Q15811 1721 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 GCP02774 474 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 RBM6P78332 1123 aaKnown RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 RPTNQ6XPR3 784 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 SYDE1Q6ZW31 735 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 UNC5CLQ8IV45 518 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 KCNH5Q8NCM2 988 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 KREMEN2Q8NCW0 462 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 MCOLN1Q9GZU1 580 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 EPN3Q9H201 632 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 PDLIM7Q9NR12 457 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 SIT1Q9Y3P8 196 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 ADCY3O60266 1144 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 DLX3O60479 287 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 FARP2O94887 1054 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 FUCA1P04066 466 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 C8AP07357 584 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 PNLIPP16233 465 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 VIPR1P32241 457 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 ZEB1P37275 1124 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 NCKAP1LP55160 1127 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 NBPF6Q5VWK0 638 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 FOXB2Q5VYV0 432 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 USP53Q70EK8 1073 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 TMC6Q7Z403 805 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 IRF2BP1Q8IU81 584 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.36□□□□□ -1.872e-6■■□□□ 11.9
VPS13A-208ENST00000423463 USP33Q8TEY7 942 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 DPF3Q92784 378 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 NBPF4Q96M43 638 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 DNAJC7Q99615 494 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 AARSD1Q9BTE6 412 aaKnown RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 CRTAC1Q9NQ79 661 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 PRDM11Q9NQV5 511 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 PCDHA2Q9Y5H9 948 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 TOPAZ1Q8N9V7 1692 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 ANKRD36BQ8N2N9 1353 aa3.36□□□□□ -1.87
VPS13A-208ENST00000423463 EDC4Q6P2E9 1401 aaKnown RBP3.36□□□□□ -1.87
VPS13A-208ENST00000423463 PRODHO43272 600 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 CAPNS1P04632 268 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 DBHP09172 617 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 HOXC12P31275 282 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 RASGRF1Q13972 1273 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 VPS72Q15906 364 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 NLRP10Q86W26 655 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 NME9Q86XW9 330 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 LZTR1Q8N653 840 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 POU5F2Q8N7G0 328 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 FBXO15Q8NCQ5 510 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 RCBTB1Q8NDN9 531 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 FAM53CQ9NYF3 392 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SIRPGQ9P1W8 387 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 TRPM3Q9HCF6 1732 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PP64 1363 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 CPDO75976 1380 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 CD163L1Q9NR16 1453 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ZC3H12DA2A288 527 aaKnown RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ETV2O00321 342 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 FYB1O15117 783 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 MEFVO15553 781 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 MSCO60682 206 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KRT1P04264 644 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 NTRK1P04629 796 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 MPOP05164 745 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SCG5P05408 212 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 EPHB3P54753 998 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ERVFRD-1P60508 538 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SRSF3P84103 164 aaKnown RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ZNF200P98182 395 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 HSP90AA2PQ14568 343 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 PLEKHN1Q494U1 663 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SOGA3Q5TF21 947 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 ARHGEF25Q86VW2 580 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 LRRC47Q8N1G4 583 aaKnown RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 DIO2Q92813 273 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 COG3Q96JB2 828 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 CHAMP1Q96JM3 812 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 POLR3GLQ9BT43 218 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 OSBPL2Q9H1P3 480 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KLHL14Q9P2G3 628 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KDM2BQ8NHM5 1336 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 BCL9LQ86UU0 1499 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SLIT2O94813 1529 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 C1QTNF9P0C862 333 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 PABPC1P11940 636 aaKnown RBP3.35□□□□□ -1.87
VPS13A-208ENST00000423463 BCL6P41182 706 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 EVA1CP58658 441 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SLC35F1Q5T1Q4 408 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 WWC2Q6AWC2 1192 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KCNT2Q6UVM3 1135 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KCTD13Q8WZ19 329 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KCNN1Q92952 543 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 OSBP2Q969R2 916 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 SPATA9Q9BWV2 254 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 KRTAP9-2Q9BYQ4 174 aa3.35□□□□□ -1.87
VPS13A-208ENST00000423463 LNPKQ9C0E8 428 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms