RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 KDM3AQ9Y4C1 1321 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 NKRFO15226 690 aaKnown RBP eCLIP16■□□□□ 0.15
SF3B1-204ENST00000414963 POLR2DO15514 142 aaKnown RBP16■□□□□ 0.15
SF3B1-204ENST00000414963 FARP2O94887 1054 aaPredicted RBP16■□□□□ 0.15
SF3B1-204ENST00000414963 SPATA31C1P0DKV0 1188 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 GRB10Q13322 594 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 KARSQ15046 597 aaKnown RBP16■□□□□ 0.15
SF3B1-204ENST00000414963 LY6KQ17RY6 165 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 DUSP28Q4G0W2 176 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 TMEM119Q4V9L6 283 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 CYFIP1Q7L576 1253 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 MIER3Q7Z3K6 550 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 CATSPER3Q86XQ3 398 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 TRIB2Q92519 343 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 CALML4Q96GE6 196 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 PNMA5Q96PV4 448 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 NT5C3AQ9H0P0 336 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 DISC1Q9NRI5 854 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 PCDHA10Q9Y5I2 948 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 KIAA1217Q5T5P2 1943 aa16■□□□□ 0.15
SF3B1-204ENST00000414963 ZSWIM8A7E2V4 1837 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 DDX39AO00148 427 aaKnown RBP15.99■□□□□ 0.15
SF3B1-204ENST00000414963 KINO60870 393 aaKnown RBP15.99■□□□□ 0.15
SF3B1-204ENST00000414963 MED24O75448 989 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 SLITRK3O94933 977 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 GGPS1O95749 300 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 P4HBP07237 508 aaKnown RBP15.99■□□□□ 0.15
SF3B1-204ENST00000414963 SLFN14P0C7P3 912 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 CCT6AP40227 531 aaKnown RBP15.99■□□□□ 0.15
SF3B1-204ENST00000414963 ADCYAP1R1P41586 468 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 ACTR2P61160 394 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 LAMC2Q13753 1193 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 CCDC144BQ3MJ40 725 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 LONRF3Q496Y0 759 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 RRAGBQ5VZM2 374 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 ABHD15Q6UXT9 468 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 CUEDC2Q9H467 287 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 MLXIPQ9HAP2 919 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 STK17AQ9UEE5 414 aa15.99■□□□□ 0.15
SF3B1-204ENST00000414963 ZHX1Q9UKY1 873 aaPredicted RBP15.99■□□□□ 0.15
SF3B1-204ENST00000414963 IGKV6D-21A0A0A0MT36 114 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 CHMP2AO43633 222 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 ACTN4O43707 911 aaKnown RBP15.98■□□□□ 0.15
SF3B1-204ENST00000414963 LYPLA2O95372 231 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 GH1P01241 217 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 SMPD1P17405 629 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 PLCG1P19174 1290 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 TNFAIP2Q03169 654 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 ARHGAP1Q07960 439 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 ECM1Q16610 540 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 NAALADL2Q58DX5 795 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 PRAMEF19Q5SWL8 479 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 KANK3Q6NY19 840 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 KRBA2Q6ZNG9 492 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 DHX37Q8IY37 1157 aaKnown RBP15.98■□□□□ 0.15
SF3B1-204ENST00000414963 PDILTQ8N807 584 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 SYAP1Q96A49 352 aaPredicted RBP15.98■□□□□ 0.15
SF3B1-204ENST00000414963 CLSTN2Q9H4D0 955 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 RGL1Q9NZL6 768 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 TSKSQ9UJT2 592 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 FAM184BQ9ULE4 1060 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 Q9Y3F1 56 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 CASP8AP2Q9UKL3 1982 aa15.98■□□□□ 0.15
SF3B1-204ENST00000414963 MCM3APO60318 1980 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 GSTTP1A0A1W2PQM5 241 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 ADCY3O60266 1144 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 PSAPP07602 524 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 SUPT20HL2P0C7V6 817 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 CYBAP13498 195 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 STAT6P42226 847 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 TMEM63BQ5T3F8 832 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 CCDC183Q5T5S1 534 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 MAP3K21Q5TCX8 1036 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 MIS18BP1Q6P0N0 1132 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 PDXDC2PQ6P474 469 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 SH3RF1Q7Z6J0 888 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 TRPV1Q8NER1 839 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 RAET1EQ8TD07 263 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 SEPT1Q8WYJ6 367 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 DHX58Q96C10 678 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 DYDC2Q96IM9 177 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 CDK5RAP3Q96JB5 506 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 GPR20Q99678 358 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 ZSWIM4Q9H7M6 989 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 MAGEF1Q9HAY2 307 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 SERTAD1Q9UHV2 236 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 GNEQ9Y223 722 aaKnown RBP15.97■□□□□ 0.15
SF3B1-204ENST00000414963 SAMM50Q9Y512 469 aa15.97■□□□□ 0.15
SF3B1-204ENST00000414963 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.96■□□□□ 0.15
SF3B1-204ENST00000414963 POTEB3A0JP26 581 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 CTAGE5O15320 804 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 HMGCRP04035 888 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 XRCC6P12956 609 aaKnown RBP eCLIP15.96■□□□□ 0.156e-10■■■■■ 46
SF3B1-204ENST00000414963 QARSP47897 775 aaKnown RBP15.96■□□□□ 0.15
SF3B1-204ENST00000414963 PSMC5P62195 406 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 MDM2Q00987 491 aaPredicted RBP15.96■□□□□ 0.15
SF3B1-204ENST00000414963 POTEBQ6S5H4 581 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 C4orf19Q8IY42 314 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 SLAIN1Q8ND83 568 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms