RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 NOD1Q9Y239 953 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 WDR64B1ANS9 1081 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 MARCH6O60337 910 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 SORBS3O60504 671 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 BAG4O95429 457 aaKnown RBP16.56■□□□□ 0.24
LIMS1-206ENST00000414829 TDP2O95551 362 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 HSP90AA1P07900 732 aaKnown RBP16.56■□□□□ 0.24
LIMS1-206ENST00000414829 PDIA4P13667 645 aaKnown RBP16.56■□□□□ 0.24
LIMS1-206ENST00000414829 JAK3P52333 1124 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 ACTR2P61160 394 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 PSMC6P62333 389 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 GUCY1B3Q02153 619 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 ITGB3BPQ13352 177 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-206ENST00000414829 KIAA0753Q2KHM9 967 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 LRCH2Q5VUJ6 765 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 FAM160B1Q5W0V3 765 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 CCDC155Q8N6L0 562 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 GLG1Q92896 1179 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 C16orf70Q9BSU1 422 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 PRDM5Q9NQX1 630 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-206ENST00000414829 PDLIM7Q9NR12 457 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 TMEM39AQ9NV64 488 aa16.56■□□□□ 0.24
LIMS1-206ENST00000414829 HAS3O00219 553 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 MSH4O15457 936 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 NEMFO60524 1076 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 KAT2BQ92831 832 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 SLC5A5Q92911 643 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 GTF2IRD1Q9UHL9 959 aa16.55■□□□□ 0.24
LIMS1-206ENST00000414829 H0YGN5 161 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 BACH1O14867 736 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 KIAA0355O15063 1070 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 LGR5O75473 907 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 RPLP2P05387 115 aaKnown RBP16.54■□□□□ 0.24
LIMS1-206ENST00000414829 PSAPP07602 524 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 U2AF2P26368 475 aaKnown RBP eCLIP16.54■□□□□ 0.24
LIMS1-206ENST00000414829 CHMP4BP1P59074 171 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 UTP14CQ5TAP6 766 aaKnown RBP16.54■□□□□ 0.24
LIMS1-206ENST00000414829 LARP1BQ659C4 914 aaKnown RBP16.54■□□□□ 0.24
LIMS1-206ENST00000414829 PLPPR4Q7Z2D5 763 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 ETNPPLQ8TBG4 499 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 KCNMB3Q9NPA1 279 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 SAMM50Q9Y512 469 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 PCDHA10Q9Y5I2 948 aa16.54■□□□□ 0.24
LIMS1-206ENST00000414829 GRIN2DO15399 1336 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 NRCAMQ92823 1304 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 DDX39AO00148 427 aaKnown RBP16.53■□□□□ 0.24
LIMS1-206ENST00000414829 DHX15O43143 795 aaKnown RBP16.53■□□□□ 0.24
LIMS1-206ENST00000414829 B4GALT4O60513 344 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 DTNBO60941 627 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 ATG7O95352 703 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 CD4P01730 458 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 RAG1P15918 1043 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 STAT5BP51692 787 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 FAAP100Q0VG06 881 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 BFSP2Q13515 415 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 MCTP1Q6DN14 999 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 CAGE1Q8TC20 777 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 AFAP1L1Q8TED9 768 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 FAM167AQ96KS9 214 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 TBX21Q9UL17 535 aa16.53■□□□□ 0.24
LIMS1-206ENST00000414829 ZMYND8Q9ULU4 1186 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-206ENST00000414829 GSTTP1A0A1W2PQM5 241 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 C17orf102A2RUQ5 167 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 SLC37A4O43826 429 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 DKC1O60832 514 aaKnown RBP eCLIP16.52■□□□□ 0.24
LIMS1-206ENST00000414829 PSMD10O75832 226 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 CALCRLQ16602 461 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 PTGISQ16647 500 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 RILPL1Q5EBL4 403 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 TRIM50Q86XT4 487 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 ATP6V0A1Q93050 837 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 HIPK3Q9H422 1215 aa16.52■□□□□ 0.24
LIMS1-206ENST00000414829 SCN10AQ9Y5Y9 1956 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 PDE4DIPQ5VU43 2346 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 IGKV6D-21A0A0A0MT36 114 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 RRN3P2A6NIE6 340 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 PITPNM1O00562 1244 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 CAND2O75155 1236 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 PARNO95453 639 aaKnown RBP16.51■□□□□ 0.23
LIMS1-206ENST00000414829 CCNE2O96020 404 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 SMIM10L2AP0DMW4 78 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 SMIM10L2BP0DMW5 78 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 PPP2R5CQ13362 524 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 EARS2Q5JPH6 523 aaKnown RBP16.51■□□□□ 0.23
LIMS1-206ENST00000414829 PDXDC2PQ6P474 469 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 ABHD15Q6UXT9 468 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 BRAPQ7Z569 592 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 TMEM199Q8N511 208 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 BCAS3Q9H6U6 928 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 ZNF302Q9NR11 478 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 DISC1Q9NRI5 854 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 HDAC6Q9UBN7 1215 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 TRPC6Q9Y210 931 aa16.51■□□□□ 0.23
LIMS1-206ENST00000414829 LAD1O00515 517 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 EDIL3O43854 480 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 TIMP1P01033 207 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 SYN1P17600 705 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 HOXC8P31273 242 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 PPFIA1Q13136 1202 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 PTK7Q13308 1070 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms