RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 POTEMA6NI47 508 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 KBTBD13C9JR72 458 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 MSH4O15457 936 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CYBAP13498 195 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CCND2P30279 289 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CDC25AP30304 524 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CYP2C19P33261 490 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 MDM2Q00987 491 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 KARSQ15046 597 aaKnown RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 LONRF3Q496Y0 759 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 ELOA2Q8IYF1 753 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 RASSF8Q8NHQ8 419 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CYP2W1Q8TAV3 490 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 NSUN6Q8TEA1 469 aaKnown RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 PURBQ96QR8 312 aaKnown RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 FUCA2Q9BTY2 467 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 TSPY26PQ9H489 355 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 RTN4Q9NQC3 1192 aaKnown RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 LRWD1Q9UFC0 647 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 SERTAD1Q9UHV2 236 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 HOOK1Q9UJC3 728 aaKnown RBP12.67□□□□□ -0.38
LINC00539-201ENST00000411525 UBIAD1Q9Y5Z9 338 aa12.67□□□□□ -0.38
LINC00539-201ENST00000411525 MEIS1O00470 390 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 SEPT4O43236 478 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 IGHA2P01877 340 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 MYCLP12524 364 aaPredicted RBP12.66□□□□□ -0.38
LINC00539-201ENST00000411525 STAT6P42226 847 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 MRPS9P82933 396 aaKnown RBP12.66□□□□□ -0.38
LINC00539-201ENST00000411525 PDIA5Q14554 519 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 E2F4Q16254 413 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 KANK3Q6NY19 840 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 CEP57L1Q8IYX8 460 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 IQUBQ8NA54 791 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 DNERQ8NFT8 737 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 GJA10Q969M2 543 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 MMTAG2Q9BU76 263 aaKnown RBP12.66□□□□□ -0.38
LINC00539-201ENST00000411525 PANK2Q9BZ23 570 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 JADE2Q9NQC1 790 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 MTMR10Q9NXD2 777 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 VAV3Q9UKW4 847 aa12.66□□□□□ -0.38
LINC00539-201ENST00000411525 KDM3AQ9Y4C1 1321 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 POTEB2H3BUK9 544 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 SLC26A4O43511 780 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 NR3C2P08235 984 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 SLFN14P0C7P3 912 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 CCDC192P0DO97 292 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ARP10275 920 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 FCER1AP12319 257 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ITGB5P18084 799 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ALDH5A1P51649 535 aaPredicted RBP12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ATN1P54259 1190 aaPredicted RBP12.65□□□□□ -0.38
LINC00539-201ENST00000411525 TYRO3Q06418 890 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 SPIRE1Q08AE8 756 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 POSTNQ15063 836 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 LRCH2Q5VUJ6 765 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 RRAGBQ5VZM2 374 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 KRT79Q5XKE5 535 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 FAM109BQ6ICB4 259 aaPredicted RBP12.65□□□□□ -0.38
LINC00539-201ENST00000411525 PDXDC2PQ6P474 469 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 SASS6Q6UVJ0 657 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 GAS2L3Q86XJ1 694 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 FAM133AQ8N9E0 248 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 TRPV1Q8NER1 839 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 SNX29Q8TEQ0 813 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 CALML4Q96GE6 196 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ZFP91Q96JP5 570 aaPredicted RBP12.65□□□□□ -0.38
LINC00539-201ENST00000411525 UIMC1Q96RL1 719 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 MMP19Q99542 508 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 ZNF577Q9BSK1 485 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 NRBP1Q9UHY1 535 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 STK24Q9Y6E0 443 aa12.65□□□□□ -0.38
LINC00539-201ENST00000411525 LTBP2Q14767 1821 aa12.65□□□□□ -0.39
LINC00539-201ENST00000411525 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 FSD2A1L4K1 749 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 GOLGA6L3A6NEY3 463 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 IPO5O00410 1097 aaKnown RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 GAS7O60861 476 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 PSMD10O75832 226 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 STAM2O75886 525 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 PRR29P0C7W0 189 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 PLCG1P19174 1290 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 RTP1P59025 263 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 PPP2R5CQ13362 524 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 PNOCQ13519 176 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 MTMR1Q13613 665 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 KCTD2Q14681 263 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 ZRSR1Q15695 479 aaKnown RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 GJC2Q5T442 439 aaPredicted RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 HAUS3Q68CZ6 603 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 NCAPH2Q6IBW4 605 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 SLC39A5Q6ZMH5 540 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 Q7L0L9 218 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 VSIG10LQ86VR7 867 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 ERMNQ8TAM6 284 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 GPRASP2Q96D09 838 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 CDK5RAP3Q96JB5 506 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 IWS1Q96ST2 819 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 TEKT3Q9BXF9 490 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms